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Searched refs:read_sets (Results 1 – 17 of 17) sorted by relevance

/dports/biology/py-ont-fast5-api/ont_fast5_api-release_4.0.0/ont_fast5_api/conversion_tools/
H A Ddemux_fast5.py71 self.read_sets: Dict[str, Set[str]] = {}
84 for demux in self.read_sets:
117 self.read_sets = self.parse_summary_demultiplex()
126 len(self.input_fast5s) * len(self.read_sets)
130 for demux in sorted(self.read_sets):
135 read_set=self.read_sets[demux],
150 for idx, _ in enumerate(sorted(self.read_sets)):
171 for read_set in self.read_sets.values():
182 read_sets = defaultdict(set)
208 read_sets[demux].add(read_id)
[all …]
/dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/tests/
H A Dtest_geneset.py47 read_sets = GeneSets.from_gmt_file_format(file_name)
48 self.assertIsNotNone(read_sets)
49 self.assertGreater(len(read_sets), 0)
50 self.assertEqual(read_sets.common_hierarchy(), self.test_hierarchy)
51 self.assertEqual(read_sets.common_org(), self.test_organism)
/dports/biology/flash/FLASH-1.2.11/
H A Dread_queue.c107 struct read_set **read_sets; member
118 q->read_sets = xmalloc(size * sizeof(q->read_sets[0])); in new_read_queue()
123 q->read_sets[i] = new_read_set(reads_per_set, true); in new_read_queue()
127 q->read_sets[i] = NULL; in new_read_queue()
145 free_read_set(q->read_sets[i]); in free_read_queue()
149 xfree(q->read_sets, q->size * sizeof(q->read_sets[0])); in free_read_queue()
172 s = q->read_sets[q->front]; in read_queue_get()
192 q->read_sets[(q->front + q->filled) % q->size] = s; in read_queue_put()
/dports/biology/py-ont-fast5-api/ont_fast5_api-release_4.0.0/test/
H A Dtest_demux_fast5.py75 self.assertEqual(demux.read_sets, truth)
92 self.assertEqual(demux.read_sets, truth)
/dports/deskutils/calibre/calibre-src-5.34.0/src/calibre/utils/fonts/sfnt/
H A Dgsub.py43 self.coverage_to_subs_map = self.read_sets(data, set_is_index=True)
63 self.coverage_to_lig_map = self.read_sets(data, self.read_ligature)
H A Dcommon.py235 def read_sets(self, data, read_item=None, set_is_index=False): member in UnknownLookupSubTable
/dports/math/moab/fathomteam-moab-7bde9dfb84a8/test/h5file/
H A Dh5portable.cpp265 void read_sets( Interface& mb, EntityHandle rows[INTERVALS] ) in read_sets() function
303 read_sets( mb, rows ); in test_read_set_contents()
336 read_sets( mb, rows ); in test_read_set_parent_child()
559 read_sets( mb, sets ); in test_read_bit_tag()
H A Dh5partial.cpp1248 Range read_sets; in test_gather_sets_ranged() local
1249 rval = mb.get_entities_by_type( file, MBENTITYSET, read_sets ); in test_gather_sets_ranged()
1274 CHECK_EQUAL( 1+contents, (int)read_sets.size() ); in test_gather_sets_ranged()
1278 CHECK_EQUAL( 2, (int)read_sets.size() ); in test_gather_sets_ranged()
1282 CHECK_EQUAL( 2, (int)read_sets.size() ); in test_gather_sets_ranged()
/dports/devel/py-poetry-core/poetry-core-1.0.7/poetry/core/_vendor/lark/parsers/
H A Dlalr_analysis.py240 read_sets = digraph(self.nonterminal_transitions, self.reads, self.directly_reads)
241 follow_sets = digraph(self.nonterminal_transitions, self.includes, read_sets)
/dports/devel/py-lark-parser/lark-parser-0.12.0/lark/parsers/
H A Dlalr_analysis.py239 read_sets = digraph(self.nonterminal_transitions, self.reads, self.directly_reads)
240 follow_sets = digraph(self.nonterminal_transitions, self.includes, read_sets)
/dports/math/moab/fathomteam-moab-7bde9dfb84a8/src/io/
H A DReadHDF5.hpp279 ErrorCode read_sets(const Range& set_file_ids);
H A DReadHDF5.cpp647 rval = read_sets(ids); in load_file_impl()
1150 rval = read_sets(sets); in load_file_partial()
1924 ErrorCode ReadHDF5::read_sets(const Range& file_ids) in read_sets() function in moab::ReadHDF5
/dports/databases/percona57-server/percona-server-5.7.36-39/mysql-test/suite/rpl/t/
H A Drpl_writeset_add_unique_key.test8 # R1. In case of binlog_row_image=minimum, when generating read_sets and
/dports/databases/mysqlwsrep57-server/mysql-wsrep-wsrep_5.7.35-25.27/mysql-test/suite/rpl/t/
H A Drpl_writeset_add_unique_key.test8 # R1. In case of binlog_row_image=minimum, when generating read_sets and
/dports/databases/percona57-pam-for-mysql/percona-server-5.7.36-39/mysql-test/suite/rpl/t/
H A Drpl_writeset_add_unique_key.test8 # R1. In case of binlog_row_image=minimum, when generating read_sets and
/dports/databases/percona57-client/percona-server-5.7.36-39/mysql-test/suite/rpl/t/
H A Drpl_writeset_add_unique_key.test8 # R1. In case of binlog_row_image=minimum, when generating read_sets and
/dports/databases/mysql57-client/mysql-5.7.36/mysql-test/suite/rpl/t/
H A Drpl_writeset_add_unique_key.test8 # R1. In case of binlog_row_image=minimum, when generating read_sets and