Searched refs:realign_flags (Results 1 – 3 of 3) sorted by relevance
1448 if(current_result -> realign_flags & CORE_IS_BREAKEVEN)1518 …if(global_context -> config.do_breakpoint_detection && !(current_result -> realign_flags & CORE_NO…1520 … + strlen(r->additional_information), "\tXS:A:%c", (current_result -> realign_flags & CORE_IS_GT_A…2452 if((is_1_OK && (res1 -> realign_flags & CORE_IS_BREAKEVEN )) ||2453 (is_2_OK && (res2 -> realign_flags & CORE_IS_BREAKEVEN))) {2461 if(res1 -> realign_flags & CORE_IS_BREAKEVEN){2785 …ead_record_i] >= best_score_highest && (current_realignment_result -> realign_flags & CORE_TOO_MAN…2804 …ead_record_i] >= best_score_highest && (current_realignment_result -> realign_flags & CORE_TOO_MAN…2811 if(is_break_even) current_realignment_result -> realign_flags |= CORE_IS_BREAKEVEN; 2984 r1_realign -> realign_flags |= CORE_IS_BREAKEVEN;[all …]
385 short realign_flags; member
3366 realign_res -> realign_flags = result->result_flags; in finalise_explain_CIGAR()3373 … if(mismatch_bases > applied_mismatch ) realign_res -> realign_flags |= CORE_TOO_MANY_MISMATCHES; in finalise_explain_CIGAR()3374 else realign_res -> realign_flags &= ~CORE_TOO_MANY_MISMATCHES; in finalise_explain_CIGAR()3412 realign_res -> realign_flags |= CORE_NOTFOUND_DONORS ; in finalise_explain_CIGAR()3413 realign_res -> realign_flags &= ~(CORE_IS_GT_AG_DONORS); in finalise_explain_CIGAR()3417 realign_res -> realign_flags &= ~ (CORE_NOTFOUND_DONORS | CORE_IS_GT_AG_DONORS); in finalise_explain_CIGAR()3420 realign_res -> realign_flags |= CORE_IS_GT_AG_DONORS; in finalise_explain_CIGAR()