/dports/biology/mapm3/mapm3-3.0_1/mapm/ |
H A D | maps.c | 239 map->rec_frac[i][MALE]= map->rec_frac[i-1][MALE]; 463 rec_frac= rec_frac/(4 - (6*rec_frac)); 465 rec_frac= rec_frac/(2 - (2*rec_frac)); 487 rec_frac= (4*rec_frac)/(1 + (6*rec_frac)); 489 rec_frac= (2*rec_frac)/(1 + (2*rec_frac)); 491 rec_frac= 2*rec_frac*(1.0-rec_frac); 508 rec_frac= rec_frac/(4 - (6*rec_frac)); 510 rec_frac= rec_frac/(2 - (2*rec_frac)); 532 rec_frac= (4*rec_frac)/(1 + (6*rec_frac)); 534 rec_frac= (2*rec_frac)/(1 + (2*rec_frac)); [all …]
|
H A D | quick23.c | 40 RECVECTOR **rec_frac; local 65 RECVECTOR **rec_frac; 89 rec_frac[0][1][0]=.5; 112 rec_frac[0][1][0]=theta; 119 RECVECTOR **rec_frac; 153 rec_frac[0][1][0]=.5; 196 rec_frac[0][1][0]=theta; 359 RECVECTOR **rec_frac; local 396 RECVECTOR **rec_frac; 467 rec_frac[0][1][0]=p; [all …]
|
H A D | ps_maps.c | 120 map_length += cm_dist(map->rec_frac[i][0]); 126 interval_length = cm_dist(map->rec_frac[i][0]); 136 interval_length += cm_dist(map->rec_frac[i][0]); 171 map_length += cm_dist(chromosome->map_list[chrom]->rec_frac[i][0]); 194 map_length += cm_dist(chromosome->map_list[i]->rec_frac[j][0]); 268 frame->rec_frac[interval-1][0] - dist <= ZERO_DIST) { 300 interval_length = cm_dist(frame->rec_frac[i][0]); 310 interval_length += cm_dist(frame->rec_frac[i][0]); 319 for(l = k; l < num_crunched; l++) dist += cm_dist(frame->rec_frac[i-(l+1)][0]);
|
H A D | print.c | 123 length+= cm_dist(map->rec_frac[i][0]); 177 male_cm= cm_dist(map->rec_frac[i][MALE]); 218 print(rf2str(map->rec_frac[i][MALE])); 228 print(rf2str(map->rec_frac[i][MALE])); 236 print(rf2str(map->rec_frac[i][FEMALE])); 270 char *rf2str(rec_frac) in rf2str() argument 271 real rec_frac; in rf2str() 275 rrange(&rec_frac,0.0,0.499999); 277 d=(*mapfunction->rec_to_dist)(rec_frac); 280 } else return(rsd(5.3,rec_frac)); [all …]
|
H A D | npt_cmds.c | 448 #define is_zero(rec_frac,sex) \ argument 449 (rec_frac[MALE]<ZERO_DIST && (!sex || rec_frac[FEMALE]<ZERO_DIST)) 491 if (i>0 && is_zero(map->rec_frac[i-1],sex)) zero[i]=TRUE; 492 if (i<last && is_zero(map->rec_frac[i+num_paired-1],sex)) zero[i]=TRUE; 494 if (i+j<last && !is_zero(map->rec_frac[i+j],sex)) zero[i]=FALSE; 512 map->rec_frac[i][MALE]= UNLINK_ME; 513 map->rec_frac[i][FEMALE]=UNLINK_ME;
|
H A D | ctm.c | 764 theta=map->rec_frac[i][0]; 799 theta= map->rec_frac[i][0]; one_minus_theta= 1.0-theta; 840 rec= map->rec_frac[i][0]; norec= 1.0 - rec; 923 map->rec_frac[i][0]=theta; 1220 map2->rec_frac[0][0]= 0.499; 1225 two_pt->theta[NOSEX]= map2->rec_frac[0][0]; 1238 for (i=0; i<map->num_loci-1; i++) map->rec_frac[i][MALE]= randnum()/2.0;
|
H A D | orders.c | 451 result[i]->dist= theta= temp->rec_frac[0][0]; 454 result[i]->dist= theta= temp->rec_frac[i-start-1][MALE]; 457 theta1= temp->rec_frac[i-start-1][MALE]; 458 theta2= temp->rec_frac[i-start][MALE]; 462 distframe= (*mapfunction->rec_to_dist)(map->rec_frac[i-1][0]); 875 placed->rec_frac[i][MALE]=placed->rec_frac[i][FEMALE]=NOT_FIXED;
|
H A D | toplevel.h | 228 get_order(S,(M)->locus,(M)->rec_frac,&(M)->num_loci,(M)->max_loci)
|
H A D | map_info.h | 20 double **rec_frac; /* [intervals][M/F], recombination fractions */ member
|
H A D | sequence.c | 483 get_order(p,map->locus,map->rec_frac,&map->num_loci,map->max_loci);
|
/dports/biology/mapm3/mapm3-3.0_1/quant/ |
H A D | qprint.c | 649 char *dist_str(rec_frac,fill) /* Always takes 5 spaces */ in dist_str() argument 650 real rec_frac; in dist_str() 656 if (fill) sf(str,"%-5.1lf",haldane_cm(rec_frac)); 657 else sf(str,"%-3.1lf",haldane_cm(rec_frac)); 659 } else sf(str,"%-5.3lf",rec_frac);
|
H A D | qlow.h | 183 double **rec_frac; /* [intervals][M/F], recombination fractions */ member
|
H A D | qraw.c | 887 void condition(prob,locus,prev_locus,observation,rec_frac,side) in condition() argument 891 real rec_frac; 898 rec= rec_frac; norec= 1.0-rec_frac; 907 transition_prob(raw.data_type,geno1,geno2,rec_frac);
|
/dports/net/boinc-client/boinc-client_release-7.8-7.8.6/client/ |
H A D | cpu_sched.cpp | 683 double rec_frac = pwf.rec_temp/rec_sum; in compute_sched_priority() local 689 sched_priority = -1e3 - rec_frac; in compute_sched_priority() 691 sched_priority = - rec_frac/resource_share_frac; in compute_sched_priority()
|