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Searched refs:rec_frac (Results 1 – 14 of 14) sorted by relevance

/dports/biology/mapm3/mapm3-3.0_1/mapm/
H A Dmaps.c239 map->rec_frac[i][MALE]= map->rec_frac[i-1][MALE];
463 rec_frac= rec_frac/(4 - (6*rec_frac));
465 rec_frac= rec_frac/(2 - (2*rec_frac));
487 rec_frac= (4*rec_frac)/(1 + (6*rec_frac));
489 rec_frac= (2*rec_frac)/(1 + (2*rec_frac));
491 rec_frac= 2*rec_frac*(1.0-rec_frac);
508 rec_frac= rec_frac/(4 - (6*rec_frac));
510 rec_frac= rec_frac/(2 - (2*rec_frac));
532 rec_frac= (4*rec_frac)/(1 + (6*rec_frac));
534 rec_frac= (2*rec_frac)/(1 + (2*rec_frac));
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H A Dquick23.c40 RECVECTOR **rec_frac; local
65 RECVECTOR **rec_frac;
89 rec_frac[0][1][0]=.5;
112 rec_frac[0][1][0]=theta;
119 RECVECTOR **rec_frac;
153 rec_frac[0][1][0]=.5;
196 rec_frac[0][1][0]=theta;
359 RECVECTOR **rec_frac; local
396 RECVECTOR **rec_frac;
467 rec_frac[0][1][0]=p;
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H A Dps_maps.c120 map_length += cm_dist(map->rec_frac[i][0]);
126 interval_length = cm_dist(map->rec_frac[i][0]);
136 interval_length += cm_dist(map->rec_frac[i][0]);
171 map_length += cm_dist(chromosome->map_list[chrom]->rec_frac[i][0]);
194 map_length += cm_dist(chromosome->map_list[i]->rec_frac[j][0]);
268 frame->rec_frac[interval-1][0] - dist <= ZERO_DIST) {
300 interval_length = cm_dist(frame->rec_frac[i][0]);
310 interval_length += cm_dist(frame->rec_frac[i][0]);
319 for(l = k; l < num_crunched; l++) dist += cm_dist(frame->rec_frac[i-(l+1)][0]);
H A Dprint.c123 length+= cm_dist(map->rec_frac[i][0]);
177 male_cm= cm_dist(map->rec_frac[i][MALE]);
218 print(rf2str(map->rec_frac[i][MALE]));
228 print(rf2str(map->rec_frac[i][MALE]));
236 print(rf2str(map->rec_frac[i][FEMALE]));
270 char *rf2str(rec_frac) in rf2str() argument
271 real rec_frac; in rf2str()
275 rrange(&rec_frac,0.0,0.499999);
277 d=(*mapfunction->rec_to_dist)(rec_frac);
280 } else return(rsd(5.3,rec_frac));
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H A Dnpt_cmds.c448 #define is_zero(rec_frac,sex) \ argument
449 (rec_frac[MALE]<ZERO_DIST && (!sex || rec_frac[FEMALE]<ZERO_DIST))
491 if (i>0 && is_zero(map->rec_frac[i-1],sex)) zero[i]=TRUE;
492 if (i<last && is_zero(map->rec_frac[i+num_paired-1],sex)) zero[i]=TRUE;
494 if (i+j<last && !is_zero(map->rec_frac[i+j],sex)) zero[i]=FALSE;
512 map->rec_frac[i][MALE]= UNLINK_ME;
513 map->rec_frac[i][FEMALE]=UNLINK_ME;
H A Dctm.c764 theta=map->rec_frac[i][0];
799 theta= map->rec_frac[i][0]; one_minus_theta= 1.0-theta;
840 rec= map->rec_frac[i][0]; norec= 1.0 - rec;
923 map->rec_frac[i][0]=theta;
1220 map2->rec_frac[0][0]= 0.499;
1225 two_pt->theta[NOSEX]= map2->rec_frac[0][0];
1238 for (i=0; i<map->num_loci-1; i++) map->rec_frac[i][MALE]= randnum()/2.0;
H A Dorders.c451 result[i]->dist= theta= temp->rec_frac[0][0];
454 result[i]->dist= theta= temp->rec_frac[i-start-1][MALE];
457 theta1= temp->rec_frac[i-start-1][MALE];
458 theta2= temp->rec_frac[i-start][MALE];
462 distframe= (*mapfunction->rec_to_dist)(map->rec_frac[i-1][0]);
875 placed->rec_frac[i][MALE]=placed->rec_frac[i][FEMALE]=NOT_FIXED;
H A Dtoplevel.h228 get_order(S,(M)->locus,(M)->rec_frac,&(M)->num_loci,(M)->max_loci)
H A Dmap_info.h20 double **rec_frac; /* [intervals][M/F], recombination fractions */ member
H A Dsequence.c483 get_order(p,map->locus,map->rec_frac,&map->num_loci,map->max_loci);
/dports/biology/mapm3/mapm3-3.0_1/quant/
H A Dqprint.c649 char *dist_str(rec_frac,fill) /* Always takes 5 spaces */ in dist_str() argument
650 real rec_frac; in dist_str()
656 if (fill) sf(str,"%-5.1lf",haldane_cm(rec_frac));
657 else sf(str,"%-3.1lf",haldane_cm(rec_frac));
659 } else sf(str,"%-5.3lf",rec_frac);
H A Dqlow.h183 double **rec_frac; /* [intervals][M/F], recombination fractions */ member
H A Dqraw.c887 void condition(prob,locus,prev_locus,observation,rec_frac,side) in condition() argument
891 real rec_frac;
898 rec= rec_frac; norec= 1.0-rec_frac;
907 transition_prob(raw.data_type,geno1,geno2,rec_frac);
/dports/net/boinc-client/boinc-client_release-7.8-7.8.6/client/
H A Dcpu_sched.cpp683 double rec_frac = pwf.rec_temp/rec_sum; in compute_sched_priority() local
689 sched_priority = -1e3 - rec_frac; in compute_sched_priority()
691 sched_priority = - rec_frac/resource_share_frac; in compute_sched_priority()