Searched refs:redMate1_ (Results 1 – 3 of 3) sorted by relevance
306 redMate1_(DP_CAT), in SwDriver()432 redMate1_.reset(); in nextRead()433 redMate1_.init(mate1len); in nextRead()513 RedundantAlns redMate1_; // database of cells used for mate 1 alignments variable
2191 if(!redMate1_.overlap(r1)) { in extendSeedsPaired()2192 redMate1_.add(r1); in extendSeedsPaired()2292 RedundantAlns& red = anchor1 ? redMate1_ : redMate2_; in extendSeedsPaired()2337 RedundantAlns& red = anchor1 ? redMate1_ : redMate2_; in extendSeedsPaired()
318 redMate1_(DP_CAT), in SwDriver()444 redMate1_.reset(); in nextRead()445 redMate1_.init(mate1len); in nextRead()525 RedundantAlns redMate1_; // database of cells used for mate 1 alignments variable2721 if(!redMate1_.overlap(r1)) { in extendSeedsPaired()2722 redMate1_.add(r1); in extendSeedsPaired()2824 RedundantAlns& red = anchor1 ? redMate1_ : redMate2_; in extendSeedsPaired()2871 RedundantAlns& red = anchor1 ? redMate1_ : redMate2_; in extendSeedsPaired()