Searched refs:refBeg (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/canu/canu-2.2/src/overlapInCore/ |
| H A D | overlapInCorePartition.C | 153 uint32 refBeg = 1; in partitionLength() local
200 refBeg = refMin; in partitionLength()
203 while ((refBeg < refMax) && in partitionLength()
204 ((refBeg < hashEnd) || (libToHash.size() != 0 && libToHash == libToRef))) { in partitionLength()
233 … fprintf(OPT, "-h " F_U32 "-" F_U32 " -r " F_U32 "-" F_U32 "\n", hashBeg, hashEnd, refBeg, refEnd); in partitionLength()
235 …2 " -r " F_U32 "-" F_U32 " --hashdatalen " F_U64 "\n", hashBeg, hashEnd, refBeg, refEnd, hashBases… in partitionLength()
237 …32P " %12" F_U64P "\n", jobName, hashBeg, hashEnd, hashReads, hashBases, refBeg, refEnd, refReads,… in partitionLength()
250 refBeg = refEnd + 1; in partitionLength()
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
| H A D | bam.c | 4219 BinList calcBinList(unsigned const refBeg, unsigned const refEnd) in calcBinList() argument
4227 rslt.range[i].beg = offset + refBeg / size; in calcBinList()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
| H A D | bam.c | 4219 BinList calcBinList(unsigned const refBeg, unsigned const refEnd) in calcBinList() argument
4227 rslt.range[i].beg = offset + refBeg / size; in calcBinList()
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