Searched refs:refBubbleLength (Results 1 – 2 of 2) sorted by relevance
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/ |
H A D | GraphBasedKBestHaplotypeFinderUnitTest.java | 167 for ( final int refBubbleLength : Arrays.asList(1, 5, 10) ) { in makeBasicBubbleDataProvider() 169 tests.add(new Object[]{refBubbleLength, altBubbleLength}); in makeBasicBubbleDataProvider() 183 SeqVertex v2Ref = new SeqVertex(Strings.repeat("A", refBubbleLength)); in testBasicBubbleData() 204 if( refBubbleLength > altBubbleLength ) { in testBasicBubbleData() 207 } else if ( refBubbleLength < altBubbleLength ) { in testBasicBubbleData() 256 for ( final int refBubbleLength : Arrays.asList(1, 5, 10) ) { in makeTripleBubbleDataProvider() 281 SeqVertex v2Ref = new SeqVertex(Strings.repeat("A", refBubbleLength)); in testTripleBubbleData() 341 if( refBubbleLength > altBubbleLength ) { in testTripleBubbleData() 344 } else if ( refBubbleLength < altBubbleLength ) { in testTripleBubbleData() 355 if( refBubbleLength > altBubbleLength ) { in testTripleBubbleData() [all …]
|
H A D | JunctionTreeKBestHaplotypeFinderUnitTest.java | 802 for ( final int refBubbleLength : Arrays.asList(1, 5, 10) ) { in makeBasicBubbleDataProvider() 804 tests.add(new Object[]{refBubbleLength, altBubbleLength}); in makeBasicBubbleDataProvider() 835 if( refBubbleLength > altBubbleLength ) { in testBasicBubbleData() 838 } else if ( refBubbleLength < altBubbleLength ) { in testBasicBubbleData() 852 for ( final int refBubbleLength : Arrays.asList(1, 5, 10) ) { in makeTripleBubbleDataProvider() 878 SeqVertex v2Ref = new SeqVertex(Strings.repeat("A", refBubbleLength)); in testTripleBubbleData() 880 SeqVertex v4Ref = new SeqVertex(Strings.repeat("C", refBubbleLength)); in testTripleBubbleData() 938 if( refBubbleLength > altBubbleLength ) { in testTripleBubbleData() 941 } else if ( refBubbleLength < altBubbleLength ) { in testTripleBubbleData() 952 if( refBubbleLength > altBubbleLength ) { in testTripleBubbleData() [all …]
|