Searched refs:refSubseqInterval (Results 1 – 7 of 7) sorted by relevance
159 …res.at(i).score == res.at(j).score && res.at(i).refSubseqInterval.startPos > res.at(j).refSubseqIn… in sortByScore()161 …es.at(i).refSubseqInterval.startPos == res.at(j).refSubseqInterval.startPos && res.at(i).refSubseq… in sortByScore()202 p.refSubseqInterval.startPos = 0; in calculateMatrixForMultipleAlignmentResult()303 p.refSubseqInterval.startPos = j; in calculateMatrixForMultipleAlignmentResult()304 p.refSubseqInterval.length = i - j; in calculateMatrixForMultipleAlignmentResult()347 p.refSubseqInterval.startPos = 0; in calculateMatrixForAnnotationsResult()402 p.refSubseqInterval.startPos = pos; in calculateMatrixForAnnotationsResult()403 p.refSubseqInterval.length = i - pos; in calculateMatrixForAnnotationsResult()406 p.refSubseqInterval.length = i - pos; in calculateMatrixForAnnotationsResult()410 p.refSubseqInterval.startPos = pos; in calculateMatrixForAnnotationsResult()[all …]
319 res[i].refSubseqInterval.startPos *= 3; in onRegion()320 res[i].refSubseqInterval.length *= 3; in onRegion()325 res[i].refSubseqInterval.startPos = in onRegion()328 res[i].refSubseqInterval.startPos += in onRegion()453 r.refSubseq = (*i).refSubseqInterval; in run()627 res[i].refSubseqInterval.length *= 3; in onRegion()632 res[i].refSubseqInterval.startPos = in onRegion()635 res[i].refSubseqInterval.startPos += in onRegion()895 p.refSubseqInterval.length = 0; in expandResults()909 res[i].refSubseqInterval.length++; in expandResults()[all …]
188 p.refSubseqInterval.startPos = 0; in calculateMatrixForMultipleAlignmentResultWithShort()325 p.refSubseqInterval.startPos = j; in calculateMatrixForMultipleAlignmentResultWithShort()326 p.refSubseqInterval.length = i - j; in calculateMatrixForMultipleAlignmentResultWithShort()382 p.refSubseqInterval.startPos = 0; in calculateMatrixForAnnotationsResultWithShort()498 p.refSubseqInterval.startPos = j; \ in calculateMatrixForAnnotationsResultWithShort()499 p.refSubseqInterval.length = i - j; \ in calculateMatrixForAnnotationsResultWithShort()575 p.refSubseqInterval.startPos = 0; in calculateMatrixForMultipleAlignmentResultWithInt()753 p.refSubseqInterval.startPos = j; in calculateMatrixForMultipleAlignmentResultWithInt()808 p.refSubseqInterval.startPos = 0; in calculateMatrixForAnnotationsResultWithInt()949 p.refSubseqInterval.startPos = j; \ in calculateMatrixForAnnotationsResultWithInt()[all …]
97 tmp.refSubseqInterval.startPos = res.refSubseq.startPos; in launch()99 tmp.refSubseqInterval.length = res.refSubseq.length; in launch()
28 refSubseqInterval = _refSubseqInterval; in setValues()
34 U2Region refSubseqInterval; variable
618 tmp.refSubseqInterval.startPos = g_directionsRec[j]; in launch()619 …tmp.refSubseqInterval.length = j - tmp.refSubseqInterval.startPos + 1 - (j) / (partSeqSize + 1) * … in launch()