| /dports/biology/gatk/gatk-4.2.0.0/scripts/funcotator/data_sources/ |
| H A D | getGencode.sh | 91 local refVersion=$3 # Reference version for which to download gencode (e.g. hg19/hg38)
116 echo "ncbi_build_version = ${refVersion}"
157 local refVersion=$2 # Reference version for which to download gencode (e.g. hg19/hg38)
160 echo "Processing ${refVersion} - Gencode ${version} ..."
163 mkdir -p ${OUT_DIR_NAME}/${refVersion}
164 pushd ${OUT_DIR_NAME}/${refVersion} &> /dev/null
167 if [[ "${refVersion}" == "hg38" ]] ; then
189 …createConfigFile "${DATA_SOURCE_NAME}" "${version}" "${refVersion}" "gencode.v${fileRefVersion}.an…
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| /dports/lang/mono/mono-5.10.1.57/external/corert/src/System.Private.TypeLoader/src/Internal/Reflection/Execution/ |
| H A D | AssemblyBinderImplementation.cs | 180 … if (!AssemblyVersionMatches(refVersion: refName.Version, defVersion: defName.Version)) in AssemblyNameMatches()
213 private static bool AssemblyVersionMatches(Version refVersion, Version defVersion) in AssemblyVersionMatches() argument
215 if (defVersion.Major < refVersion.Major) in AssemblyVersionMatches()
217 if (defVersion.Major > refVersion.Major) in AssemblyVersionMatches()
220 if (defVersion.Minor < refVersion.Minor) in AssemblyVersionMatches()
222 if (defVersion.Minor > refVersion.Minor) in AssemblyVersionMatches()
225 if (refVersion.Build == -1) in AssemblyVersionMatches()
227 if (defVersion.Build < refVersion.Build) in AssemblyVersionMatches()
229 if (defVersion.Build > refVersion.Build) in AssemblyVersionMatches()
232 if (refVersion.Revision == -1) in AssemblyVersionMatches()
[all …]
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| /dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/test/tools/launcher/ |
| H A D | VersionCheck.java | 113 static String refVersion; field in VersionCheck
153 if (refVersion.compareTo(testStr) != 0) { in compareJVersionStrings()
158 System.out.print(refVersion); in compareJVersionStrings()
180 String bStr = refVersion.substring(refVersion.lastIndexOf("build") + in compareInternalStrings()
182 refVersion.lastIndexOf(")")); in compareInternalStrings()
216 refVersion = getVersion(javaCmd, "-version"); in init()
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| /dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jdk/test/tools/launcher/ |
| H A D | VersionCheck.java | 113 static String refVersion; field in VersionCheck
153 if (refVersion.compareTo(testStr) != 0) { in compareJVersionStrings()
158 System.out.print(refVersion); in compareJVersionStrings()
180 String bStr = refVersion.substring(refVersion.lastIndexOf("build") + in compareInternalStrings()
182 refVersion.lastIndexOf(")")); in compareInternalStrings()
216 refVersion = getVersion(javaCmd, "-version"); in init()
|
| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/test/jdk/tools/launcher/ |
| H A D | VersionCheck.java | 121 static String refVersion; field in VersionCheck
181 if (refVersion.compareTo(testStr) != 0) { in testJVersionStrings()
186 System.out.print(refVersion); in testJVersionStrings()
213 String bStr = refVersion.substring(refVersion.indexOf("build") + in testInternalStrings()
215 refVersion.lastIndexOf(")")); in testInternalStrings()
266 refVersion = getVersion(javaCmd, "-version"); in init()
|
| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/test/jdk/tools/launcher/ |
| H A D | VersionCheck.java | 121 static String refVersion; field in VersionCheck
181 if (refVersion.compareTo(testStr) != 0) { in testJVersionStrings()
186 System.out.print(refVersion); in testJVersionStrings()
213 String bStr = refVersion.substring(refVersion.indexOf("build") + in testInternalStrings()
215 refVersion.lastIndexOf(")")); in testInternalStrings()
266 refVersion = getVersion(javaCmd, "-version"); in init()
|
| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/test/jdk/tools/launcher/ |
| H A D | VersionCheck.java | 117 static String refVersion; field in VersionCheck
177 if (refVersion.compareTo(testStr) != 0) { in testJVersionStrings()
182 System.out.print(refVersion); in testJVersionStrings()
209 String bStr = refVersion.substring(refVersion.indexOf("build") + in testInternalStrings()
211 refVersion.lastIndexOf(")")); in testInternalStrings()
262 refVersion = getVersion(javaCmd, "-version"); in init()
|
| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/test/jdk/tools/launcher/ |
| H A D | VersionCheck.java | 117 static String refVersion; field in VersionCheck
177 if (refVersion.compareTo(testStr) != 0) { in testJVersionStrings()
182 System.out.print(refVersion); in testJVersionStrings()
209 String bStr = refVersion.substring(refVersion.indexOf("build") + in testInternalStrings()
211 refVersion.lastIndexOf(")")); in testInternalStrings()
262 refVersion = getVersion(javaCmd, "-version"); in init()
|
| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/test/jdk/tools/launcher/ |
| H A D | VersionCheck.java | 118 static String refVersion; field in VersionCheck
178 if (refVersion.compareTo(testStr) != 0) { in testJVersionStrings()
183 System.out.print(refVersion); in testJVersionStrings()
210 String bStr = refVersion.substring(refVersion.indexOf("build") + in testInternalStrings()
212 refVersion.lastIndexOf(")")); in testInternalStrings()
263 refVersion = getVersion(javaCmd, "-version"); in init()
|
| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/test/jdk/tools/launcher/ |
| H A D | VersionCheck.java | 121 static String refVersion; field in VersionCheck
181 if (refVersion.compareTo(testStr) != 0) { in testJVersionStrings()
186 System.out.print(refVersion); in testJVersionStrings()
213 String bStr = refVersion.substring(refVersion.indexOf("build") + in testInternalStrings()
215 refVersion.lastIndexOf(")")); in testInternalStrings()
266 refVersion = getVersion(javaCmd, "-version"); in init()
|
| /dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/test/jdk/tools/launcher/ |
| H A D | VersionCheck.java | 114 static String refVersion; field in VersionCheck
174 if (refVersion.compareTo(testStr) != 0) { in testJVersionStrings()
179 System.out.print(refVersion); in testJVersionStrings()
206 String bStr = refVersion.substring(refVersion.indexOf("build") + in testInternalStrings()
208 refVersion.lastIndexOf(")")); in testInternalStrings()
259 refVersion = getVersion(javaCmd, "-version"); in init()
|
| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/test/jdk/tools/launcher/ |
| H A D | VersionCheck.java | 122 static String refVersion; field in VersionCheck
182 if (refVersion.compareTo(testStr) != 0) { in testJVersionStrings()
187 System.out.print(refVersion); in testJVersionStrings()
214 String bStr = refVersion.substring(refVersion.indexOf("build") + in testInternalStrings()
216 refVersion.lastIndexOf(")")); in testInternalStrings()
267 refVersion = getVersion(javaCmd, "-version"); in init()
|
| /dports/textproc/fop/fop-2.6/fop-core/src/main/java/org/apache/fop/tools/anttasks/ |
| H A D | RunTest.java | 49 private String refVersion = ""; field in RunTest
80 refVersion = str; in setRefVersion()
155 if (!get.invoke(null, new Object[]{}).equals(refVersion)) { in runReference()
157 + refVersion); in runReference()
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| /dports/science/v_sim/v_sim-3.8.0/src/ |
| H A D | gtk_about.c | 421 gchar **version, **refVersion; in aboutXML_element() local
436 refVersion = g_strsplit_set(VISU_VERSION, ".-", 4); in aboutXML_element()
438 refMinor = (atoi(refVersion[2]) == 99)? in aboutXML_element()
439 atoi(refVersion[1]) + 1:atoi(refVersion[1]); in aboutXML_element()
443 g_strfreev(refVersion); in aboutXML_element()
|
| /dports/sysutils/khelpcenter/khelpcenter-21.12.3/searchhandlers/ |
| H A D | xapiancommon.cpp | 26 , refVersion( KHC_DB_VERSION ) in DatabaseVersionMismatch()
58 …version mismatch in Xapian DB: found" << e.version << "vs wanted" << e.refVersion << "- throwing i… in openWritableDbHelper()
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| H A D | xapiancommon.h | 26 const int refVersion; member
|
| H A D | xapiansearch.cpp | 91 …ing(LOG) << "Own version mismatch in Xapian DB: found" << e.version << "vs wanted" << e.refVersion; in main()
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/funcotator/dataSources/ |
| H A D | DbSnpIntegrationTest.java | 110 public void testDbSnpDataSourceParsing( final String refVersion, in testDbSnpDataSourceParsing() argument
116 …final Path dbSnpFile = (refVersion.equals(BaseFuncotatorArgumentCollection.FuncotatorReferenceVers… in testDbSnpDataSourceParsing()
|
| /dports/databases/mongodb36/mongodb-src-r3.6.23/src/mongo/s/client/ |
| H A D | version_manager.cpp | 299 const ChunkVersion refVersion(refManager->getVersion(shard->getId())); in checkShardVersion() local
306 << refVersion.toString() in checkShardVersion()
316 throw StaleConfigException(ns, msg, refVersion, currentVersion); in checkShardVersion()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/funcotator/dataSources/ |
| H A D | DataSourceUtils.java | 169 public static Map<Path, Properties> getAndValidateDataSourcesFromPaths( final String refVersion, in getAndValidateDataSourcesFromPaths() argument
171 Utils.nonNull(refVersion); in getAndValidateDataSourcesFromPaths()
204 …h dataSourceDir = getCloudSafePathToDirectory(dataSourceTopDir.resolve(refVersion).toUri().toStrin… in getAndValidateDataSourcesFromPaths()
244 …row new UserException("ERROR: Could not find any data sources for given reference: " + refVersion); in getAndValidateDataSourcesFromPaths()
|