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Searched refs:ref_pos_1_based (Results 1 – 2 of 2) sorted by relevance

/dports/biology/sra-tools/sra-tools-2.11.0/test/samline/
H A Drefbases.c68 static uint32_t read_bases( const VCursor * cur, char * buffer, uint32_t ref_pos_1_based, in read_bases() argument
72 uint32_t row_id = ( ( ref_pos_1_based - 1 ) / max_seq_len ) + 1; in read_bases()
73 uint32_t offset = ( ref_pos_1_based - 1 ) - ( ( row_id - 1 ) * max_seq_len ); in read_bases()
86 char * read_refbases( const char * refname, uint32_t ref_pos_1_based, uint32_t ref_len, uint32_t * … in read_refbases() argument
122 … if ( base_count > ( ref_pos_1_based + ref_len ) && max_seq_len > 0 ) in read_refbases()
127 uint32_t n_read = read_bases( cur, res, ref_pos_1_based, in read_refbases()
H A Drefbases.h34 char * read_refbases( const char * refname, uint32_t ref_pos_1_based,