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Searched refs:ref_shift (Results 1 – 7 of 7) sorted by relevance

/dports/science/openems/openEMS-0.0.35-71-g4c24b6e/matlab/
H A DcalcTLPort.m72 ref_shift = nan; variable
79 ref_shift = varargin{n+1}; variable
134 if ~isnan(ref_shift)
135 ref_shift = ref_shift * port.LengthScale; variable
137 ref_shift = ref_shift - port.measplanepos; variable
138 ref_shift = ref_shift * port.drawingunit; variable
141 phase = real(beta)*ref_shift;
H A DcalcWGPort.m63 ref_shift = nan; variable
71 ref_shift = varargin{n+1}; variable
109 if ~isnan(ref_shift)
111 ref_shift = ref_shift - port.measplanepos; variable
112 ref_shift = ref_shift * port.drawingunit; variable
115 phase = real(beta)*ref_shift;
/dports/biology/bwa/bwa-0.7.17/
H A Dbwase.c38 s->ref_shift = (int)p->n_del - (int)p->n_ins; in bwa_aln2seq_core()
74 s->multi[z].ref_shift = (int)q->n_del - (int)q->n_ins; in bwa_aln2seq_core()
85 s->multi[z].ref_shift = (int)q->n_del - (int)q->n_ins; in bwa_aln2seq_core()
138 seq->pos = bwa_sa2pos(bns, bwt, seq->sa, seq->len + seq->ref_shift, &strand); in bwa_cal_pac_pos_core()
157 q->pos = bwa_sa2pos(bns, bwt, q->pos, p->len + q->ref_shift, &strand); in bwa_cal_pac_pos()
169 …_core(bwtint_t l_pac, const ubyte_t *pacseq, int len, ubyte_t *seq, int ref_shift, bwtint_t *_rb, … in bwa_refine_gapped_core() argument
179 rb = *_rb; re = rb + len + ref_shift; in bwa_refine_gapped_core()
305 …gapped_core(bns->l_pac, pacseq, s->len, q->strand? s->rseq : s->seq, q->ref_shift, &q->pos, &n_cig… in bwa_refine_gapped()
312 …gapped_core(bns->l_pac, pacseq, s->len, s->strand? s->rseq : s->seq, s->ref_shift, &s->pos, &s->n_… in bwa_refine_gapped()
H A Dbwtaln.h61 int ref_shift; member
82 int ref_shift; member
H A Dbwape.c298 p[j]->pos = bwa_sa2pos(bns, bwt, p[j]->sa, p[j]->len + p[j]->ref_shift, &strand); in bwa_cal_pac_pos_pe()
348 z->a[l - r->k] = bwa_sa2pos(bns, bwt, l, p[j]->len + p[j]->ref_shift, &strand)<<1; in bwa_cal_pac_pos_pe()
360 x.x = bwa_sa2pos(bns, bwt, l, p[j]->len + p[j]->ref_shift, &strand); in bwa_cal_pac_pos_pe()
380 q->pos = bwa_sa2pos(bns, bwt, q->pos, p[j]->len + q->ref_shift, &strand); in bwa_cal_pac_pos_pe()
/dports/games/openclonk/openclonk-release-8.1-src/src/control/
H A DC4PlayerControl.cpp307 DWORD ref_shift = rKeyComboItem.Key.dwShift; in ResolveRefs() local
308 if (ref_shift) in ResolveRefs()
312 assignment_combo_item.Key.dwShift |= ref_shift; in ResolveRefs()
/dports/science/openems/openEMS-0.0.35-71-g4c24b6e/matlab/examples/__deprecated__/
H A DMSL2.m220 ref_shift = abs(portstop(1) - portstart(1)); variable