| /dports/biology/viennarna/ViennaRNA-2.4.18/src/RNAforester/src/ |
| H A D | algebra.h | 38 virtual R replacepair(L la, L lb, R down, L ra, L rb, R over) const =0;
56 virtual R replacepair(L la, L lb, R down, L ra, L rb, R over) const =0;
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| H A D | forest.t.cpp | 109 …return alg.replacepair(label(i+1),label(i+1),down,label(getRightmostBrotherIndex(i+1)),label(getRi… in maxScore()
153 …return alg.replacepair(label(i+1),label(i+1),down,label(getRightmostBrotherIndex(i+1)),label(getRi… in maxScore()
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| H A D | rna_algebra.h | 63 …double replacepair(RNA_Alphabet la, RNA_Alphabet lb, double down, RNA_Alphabet ra, RNA_Alphabet rb… in replacepair() function
238 …double replacepair(RNA_Alphabet la, RNA_Alphabet lb, double down, RNA_Alphabet ra, RNA_Alphabet rb… in replacepair() function
442 …double replacepair(RNA_Alphabet la, RNA_Alphabet lb, double down, RNA_Alphabet ra, RNA_Alphabet rb… in replacepair() function
617 …double replacepair(RNA_Alphabet la, RNA_Alphabet lb, double down, RNA_Alphabet ra, RNA_Alphabet rb… in replacepair() function
817 …double replacepair(RNA_Alphabet la, RNA_Alphabet lb, double down, RNA_Alphabet ra, RNA_Alphabet rb… in replacepair() function
1049 …double replacepair(RNA_Alphabet la, RNA_Alphabet lb, double down, RNA_Alphabet ra, RNA_Alphabet rb… in replacepair() function
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| H A D | alignment.t.cpp | 285 score = rnaAlg_->replacepair(this->f1_->label(p.i+1), in compareCSFPairTD()
353 score = rnaAlg_->replacepair(this->f1_->label(p.i+1), in compareCSFPair()
449 score = rnaAlg_->replacepair(this->f1_->label(p.i+1), this->f2_->label(p.k+1), dwn, in recursiveFillAnchored()
581 h_score = rnaAlg_->replacepair(this->f1_->label(p.i+1), this->f2_->label(p.k+1), in backtrace()
1073 score[t] = rnaAlg_->replacepair(this->f1_->label(p.i+1), this->f2_->label(p.k+1), dwn, in recursiveFillAnchored()
1250 score[t] = rnaAlg_->replacepair(this->f1_->label(p.i+1), this->f2_->label(p.k+1), dwn, in compareCSFPairTD()
1382 score = rnaAlg_->replacepair(this->f1_->label(p.i+1), this->f2_->label(p.k+1), dwn, in compareCSFPair()
1765 h_score = rnaAlg_->replacepair(this->f1_->label(p.i+1), this->f2_->label(p.k+1), dwn, in backtrace()
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| H A D | alignment.h | 239 return rnaAlg_->replacepair(this->f1_->label(p.i+1), in computeReplacementScoreRNA()
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| /dports/science/buddy/buddy-2.4/src/ |
| H A D | bddop.c | 95 static int *replacepair; /* Current replace pair */ variable
1127 replacepair = pair->result; in bdd_replace()
1174 res = bdd_correctify(LEVEL(replacepair[LEVEL(r)]), READREF(2), READREF(1)); in replace_rec()
1364 replacepair = pair->result; in bdd_veccompose()
1410 res = ite_rec(replacepair[LEVEL(f)], READREF(1), READREF(2)); in veccompose_rec()
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| /dports/math/spot/spot-2.10.2/buddy/src/ |
| H A D | bddop.c | 116 static int *replacepair; /* Current replace pair */ variable
1735 replacepair = pair->result; in bdd_replace()
1787 res = bdd_correctify(LEVEL(replacepair[LEVEL(r)]), READREF(2), READREF(1)); in replace_rec()
2031 replacepair = pair->result; in bdd_veccompose()
2082 res = ite_rec(replacepair[LEVEL(f)], READREF(1), READREF(2)); in veccompose_rec()
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| /dports/math/py-spot/spot-2.10.2/buddy/src/ |
| H A D | bddop.c | 116 static int *replacepair; /* Current replace pair */ variable
1735 replacepair = pair->result; in bdd_replace()
1787 res = bdd_correctify(LEVEL(replacepair[LEVEL(r)]), READREF(2), READREF(1)); in replace_rec()
2031 replacepair = pair->result; in bdd_veccompose()
2082 res = ite_rec(replacepair[LEVEL(f)], READREF(1), READREF(2)); in veccompose_rec()
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | sqnutil3.c | 22043 typedef struct replacepair { struct
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| H A D | macroapi.c | 26981 typedef struct replacepair { struct
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