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Searched refs:retstate (Results 1 – 25 of 85) sorted by relevance

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/dports/biology/wise/wise2.4.1/src/models/
H A Dthreestatedp.h392 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
396 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
398 …tein * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
432 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
434 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dthreestateloop.h392 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
396 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
398 …Loop * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
432 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
434 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dmotifmatrixdp.h388 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
392 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
394 …trix * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
428 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
430 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dfivestate.h392 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
396 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
398 …tein * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
432 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
434 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dlocaldba.h381 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
385 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
387 …lock * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
421 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
423 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dslimdba.h410 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
414 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
416 …lock * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
450 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
452 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Destloop3.h406 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
410 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
412 …oop3 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
446 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
448 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Destslimloop.h405 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
409 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
411 …oop3 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
445 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
447 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dgeneloop21.h418 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
422 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
424 …op21 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
458 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
460 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dgenewise21.h418 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
422 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
424 …se21 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
458 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
460 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dgenomewise9.h427 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
431 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
433 …ise9 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
467 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
469 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dgwlite.h402 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
406 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
408 …odel * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
442 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
444 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dgenestretch6.h411 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
415 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
417 …tch6 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
451 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
453 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dproteinsw.h414 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
418 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
420 …inSW * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
454 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
456 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dgeneloop6.h404 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
408 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
410 …oop6 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
444 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
446 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dgenephase6.h411 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
415 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
417 …ase6 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
451 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
453 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dgenewise4.h403 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
407 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
409 …ise4 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
443 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
445 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dgenewise6.h403 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
407 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
409 …ise6 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
443 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
445 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dpseudowise7.h410 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
414 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
416 …ise7 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
450 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
452 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Deditdistdp.h475 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
479 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
481 …ance * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
515 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
517 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Destfrag3.h398 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
402 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
404 …rag3 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
438 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
440 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Destquick3.h405 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
409 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
411 …ick3 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
445 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
447 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Destslim3.h405 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
409 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
411 …lim3 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
445 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
447 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Destwise3.h405 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
409 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
411 …ise3 * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
445 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
447 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
H A Dalignwisedp.h463 …enj,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
467 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
469 …Wise * mat,int i,int j,int state,int cscore,int * reti,int * retj,int * retstate,boolean * retspec…
503 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…
505 …mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspec…

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