Searched refs:rg1_ext (Results 1 – 5 of 5) sorted by relevance
34 Int4 rg1_ext; member
201 Int4 rg1_ext; /*the right end gap ext. penalty for the first sequence */ member420 NLM_EXTERN void SetGlobaltOptions(GlobalBandStructPtr gbsp, Int4 lg1_ext, Int4 rg1_ext, Int4 lg2_ex…
117 msp->rg1_ext =0; in MashNew()160 SetGlobaltOptions(gbsp,msp->lg1_ext,msp->rg1_ext, in CC_CreatBandStruct()704 msp->rg1_ext=(Int4)msp->gap_extend; in AlignExtreme5()729 msp->rg1_ext=(Int4)msp->gap_extend; in AlignExtreme5()764 msp->rg1_ext=0; in AlignExtreme3()789 msp->rg1_ext=0; in AlignExtreme3()
717 NLM_EXTERN void SetGlobaltOptions(GlobalBandStructPtr gbsp, Int4 lg1_ext, Int4 rg1_ext, Int4 lg2_ex… in SetGlobaltOptions() argument726 opt->rg1_ext = rg1_ext; in SetGlobaltOptions()
152 data.reghA = option->rg1_ext; in gband_linear_gap()