| /dports/net/py-mpi4py/mpi4py-3.1.3/demo/cython/ |
| H A D | helloworld.pyx | 58 cdef int rlen1=0
60 ierr1 = mpi.MPI_Get_processor_name(pname1, &rlen1)
61 pname1[rlen1] = 0 # just in case ;-)
|
| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | SplitPairsAndSingles.java | 642 final int rlen1=(r1==null ? -1 : r1.length()); in processPair() local
644 if(verbose){System.err.println("rlen="+rlen1+", rlen2="+rlen2);} in processPair()
646 if(rlen1>=minReadLength && rlen2>=minReadLength){ in processPair()
654 pairBasesOut+=(rlen1+rlen2); in processPair()
655 }else if(rlen1>=minReadLength){ in processPair()
661 singleBasesOut+=rlen1; in processPair()
|
| H A D | BBDuk.java | 2649 rlen1=r1.length(); in run()
2664 rlen1=r1.length(); in run()
2682 rlen1=r1.length(); in run()
2825 int rlen1=0, rlen2=0; in run() local
2830 rlen1=r1.length(); in run()
2852 int rlen1=0, rlen2=0; in run() local
2857 rlen1=r1.length(); in run()
2879 int rlen1=0, rlen2=0; in run() local
2888 rlen1=r1.length(); in run()
2916 int rlen1=0, rlen2=0; in run() local
[all …]
|
| H A D | BBDuk2.java | 2283 int rlen1=0, rlen2=0; in run() local
2290 rlen1=r1.length(); in run()
2291 if(rlen1<minlen1 || rlen1>maxReadLength){r1.setDiscarded(true);} in run()
2427 int rlen1=0, rlen2=0; in ktrim0() local
2434 rlen1=r1.length(); in ktrim0()
2435 if(rlen1<minlen1){r1.setDiscarded(true);} in ktrim0()
2448 xsum+=(rlen1+rlen2); in ktrim0()
|
| /dports/math/mathomatic/mathomatic-ceb0861/ |
| H A D | factor.c | 770 int len, rlen1, len2; local
826 rlen1 = ((i == e1) ? 1 : (e1 - i - 1));
827 len = (i - i1) + 1 + ((op1 == DIVIDE && !both_divide) ? 2 : 0) + rlen1 + 1
866 blt(&equation[i+3], &equation[i+1], rlen1 * sizeof(token_type));
875 binary_parenthesize(equation, i + 1 + rlen1, i);
877 i += rlen1 + 1;
|
| /dports/biology/subread/subread-2.0.2-source/src/ |
| H A D | core-junction.h | 159 …xt_t * global_context, char * rname1, char * chr1, unsigned int pos1, int rlen1, int is_1_negative…
|
| H A D | core.h | 687 …nt pos1, unsigned int pos2, int * is_PE_distance, int * is_same_chromosome , int rlen1, int rlen2);
|
| /dports/biology/kallisto/kallisto-0.46.1/src/ |
| H A D | ProcessReads.cpp | 1591 int rlen1 = seqs[si1].second; in processBufferTrans() local
1875 b1c.core.pos = (pos1.second) ? pos1.first-1 : pos1.first - rlen1; in processBufferTrans()
1877 overhang1 = b1c.core.pos + rlen1 - targetlength; in processBufferTrans()
1933 fixCigarStringTrans(b1c, rlen1, softclip1, overhang1); in processBufferTrans()
1993 int rlen1 = seqs[si1].second; in processBufferGenome() local
2195 int trpos = (pos1.second) ? pos1.first-1 : pos1.first - rlen1; in processBufferGenome()
2196 if (!model.translateTrPosition(t, trpos, rlen1, pos1.second, tra1)) { in processBufferGenome()
|
| /dports/sysutils/u-boot-chip/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-olimex-a20-som-evb/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-olinuxino-lime/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-olinuxino-lime2/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-olinuxino-lime2-emmc/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-cubox-hummingboard/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-cubieboard2/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-cubieboard/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-firefly-rk3399/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-sinovoip-bpi-m3/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-sopine/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-a64-olinuxino/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-rpi/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-nanopi-r4s/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-nanopi-m1plus/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-wandboard/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|
| /dports/sysutils/u-boot-beaglebone/u-boot-2021.07/drivers/mtd/nand/raw/ |
| H A D | octeontx_nand.c | 139 u32 rlen1:3; member
208 u32 rlen1:3; member
1041 cmd.u.rd_cmd.rlen1 = t7; in ndf_read()
|