Searched refs:rs_by_name (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
| H A D | bam.c | 1240 BAMRefSeq *const x = &self->refSeq[rs_by_name[m]]; in ParseSQ()
1364 static rc_t ParseHeader(BAMFile *self, char hdata[], size_t hlen, unsigned const rs_by_name[]) { in ParseHeader() argument
1404 rc = ParseSQ(self, &hdata[i + 1], hlen - i - 1, &used, rs_by_name); in ParseHeader()
1586 unsigned *rs_by_name = NULL; in ProcessHeader() local
1635 rs_by_name = calloc(nrefs, sizeof(rs_by_name[0])); in ProcessHeader()
1636 if (rs_by_name == NULL) in ProcessHeader()
1643 rs_by_name[i] = i; in ProcessHeader()
1654 ksort((void *)rs_by_name, self->refSeqs, sizeof(rs_by_name[0]), comp_RefSeqName, self); in ProcessHeader()
1661 rc = ParseHeader(self, self->headerData1, hlen, rs_by_name); in ProcessHeader()
1666 if (rs_by_name != NULL) in ProcessHeader()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
| H A D | bam.c | 1240 BAMRefSeq *const x = &self->refSeq[rs_by_name[m]]; in ParseSQ()
1364 static rc_t ParseHeader(BAMFile *self, char hdata[], size_t hlen, unsigned const rs_by_name[]) { in ParseHeader() argument
1404 rc = ParseSQ(self, &hdata[i + 1], hlen - i - 1, &used, rs_by_name); in ParseHeader()
1586 unsigned *rs_by_name = NULL; in ProcessHeader() local
1635 rs_by_name = calloc(nrefs, sizeof(rs_by_name[0])); in ProcessHeader()
1636 if (rs_by_name == NULL) in ProcessHeader()
1643 rs_by_name[i] = i; in ProcessHeader()
1654 ksort((void *)rs_by_name, self->refSeqs, sizeof(rs_by_name[0]), comp_RefSeqName, self); in ProcessHeader()
1661 rc = ParseHeader(self, self->headerData1, hlen, rs_by_name); in ProcessHeader()
1666 if (rs_by_name != NULL) in ProcessHeader()
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