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Searched refs:rs_index_type (Results 1 – 15 of 15) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/bitset/
H A Dbmsparsevec_util.h50 typedef typename bvector_type::rs_index_type rs_index_type; typedef
157 rs_index_type* rs_index_; ///< rank translation index
402 (rs_index_type*) bm::aligned_new_malloc(sizeof(rs_index_type)); in construct_rs_index()
403 rs_index_ = new(rs_index_) rs_index_type(); // placement new in construct_rs_index()
H A Dbmalgo.h474 typedef typename BV::rs_index_type rs_index_type; typedef
503 const rs_index_type& bc_idx,
666 const rs_index_type& bc_idx, in compress_by_source()
675 const rs_index_type& bc_index) in compress_by_source()
706 const rs_index_type& bc_index_; in compress_by_source()
H A Dbmsparsevec_compr.h77 typedef typename bvector_type::rs_index_type rs_index_type; typedef
754 const rs_index_type* get_RS() const BMNOEXCEPT in get_RS()
1309 st->memory_used += sizeof(rs_index_type); in optimize()
1311 (sizeof(typename rs_index_type::size_type) in optimize()
1312 + sizeof(typename rs_index_type::sb_pair_type)); in optimize()
1335 st->memory_used += sizeof(rs_index_type); in calc_stat()
1337 (sizeof(typename rs_index_type::size_type) in calc_stat()
1338 + sizeof(typename rs_index_type::sb_pair_type)); in calc_stat()
1507 (rs_index_type*) bm::aligned_new_malloc(sizeof(rs_index_type)); in construct_rs_index()
1508 bv_blocks_ptr_ = new(bv_blocks_ptr_) rs_index_type(); // placement new in construct_rs_index()
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H A Dbm.h848 typedef rs_index<allocator_type> rs_index_type; typedef
1318 const rs_index_type& rs_idx) const BMNOEXCEPT;
1396 const rs_index_type& rs_idx) const BMNOEXCEPT;
1409 const rs_index_type& rs_idx) const BMNOEXCEPT in rank()
1427 const rs_index_type& rs_idx) const BMNOEXCEPT;
1447 const rs_index_type& rs_idx) const BMNOEXCEPT;
1655 const rs_index_type& rs_idx) const BMNOEXCEPT;
1674 const rs_index_type& rs_idx) const BMNOEXCEPT;
2348 void bvector<Alloc>::build_rs_index(rs_index_type* rs_idx, in build_rs_index()
2480 const rs_index_type& rs_idx) BMNOEXCEPT in block_count_to()
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H A Dbmrandom.h116 typename bvector_type::rs_index_type rsi_; ///< RS index (block counts)
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/bitset/
H A Dbmsparsevec_util.h50 typedef typename bvector_type::rs_index_type rs_index_type; typedef
157 rs_index_type* rs_index_; ///< rank translation index
402 (rs_index_type*) bm::aligned_new_malloc(sizeof(rs_index_type)); in construct_rs_index()
403 rs_index_ = new(rs_index_) rs_index_type(); // placement new in construct_rs_index()
H A Dbmalgo.h474 typedef typename BV::rs_index_type rs_index_type; typedef
503 const rs_index_type& bc_idx,
666 const rs_index_type& bc_idx, in compress_by_source()
675 const rs_index_type& bc_index) in compress_by_source()
706 const rs_index_type& bc_index_; in compress_by_source()
H A Dbmsparsevec_compr.h77 typedef typename bvector_type::rs_index_type rs_index_type; typedef
754 const rs_index_type* get_RS() const BMNOEXCEPT in get_RS()
1309 st->memory_used += sizeof(rs_index_type); in optimize()
1311 (sizeof(typename rs_index_type::size_type) in optimize()
1312 + sizeof(typename rs_index_type::sb_pair_type)); in optimize()
1335 st->memory_used += sizeof(rs_index_type); in calc_stat()
1337 (sizeof(typename rs_index_type::size_type) in calc_stat()
1338 + sizeof(typename rs_index_type::sb_pair_type)); in calc_stat()
1507 (rs_index_type*) bm::aligned_new_malloc(sizeof(rs_index_type)); in construct_rs_index()
1508 bv_blocks_ptr_ = new(bv_blocks_ptr_) rs_index_type(); // placement new in construct_rs_index()
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H A Dbm.h848 typedef rs_index<allocator_type> rs_index_type; typedef
1318 const rs_index_type& rs_idx) const BMNOEXCEPT;
1396 const rs_index_type& rs_idx) const BMNOEXCEPT;
1409 const rs_index_type& rs_idx) const BMNOEXCEPT in rank()
1427 const rs_index_type& rs_idx) const BMNOEXCEPT;
1447 const rs_index_type& rs_idx) const BMNOEXCEPT;
1655 const rs_index_type& rs_idx) const BMNOEXCEPT;
1674 const rs_index_type& rs_idx) const BMNOEXCEPT;
2348 void bvector<Alloc>::build_rs_index(rs_index_type* rs_idx, in build_rs_index()
2480 const rs_index_type& rs_idx) BMNOEXCEPT in block_count_to()
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H A Dbmrandom.h116 typename bvector_type::rs_index_type rsi_; ///< RS index (block counts)
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/bitset/demo/
H A Dbm_sparse_sample.cpp96 bm::bvector<>::rs_index_type rs_index; in main()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/bitset/test/
H A Dbmtest32.cpp845 std::unique_ptr<bvect::rs_index_type> bc_arr(new bvect::rs_index_type()); in BitCountSparseTest()
3456 std::unique_ptr<bvect::rs_index_type> bc1(new bvect::rs_index_type()); in RankCompressionTest()
3458 std::unique_ptr<bvect::rs_index_type> bc2(new bvect::rs_index_type()); in RankCompressionTest()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/phy_tree/
H A Dphytree_calc.cpp306 bm::bvector<>::rs_index_type rs_index; in x_CalcDivergenceMatrix()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/bitset/stress_test/
H A Dstress64.cpp2076 bvect::rs_index_type bc_arr; in CountRangeTest()
2089 bvect::rs_index_type bc_arr1; in CountRangeTest()
2104 bvect::rs_index_type bc_arr; in CountRangeTest()
2117 bvect::rs_index_type bc_arr1; in CountRangeTest()
2134 bvect::rs_index_type bc_arr; in CountRangeTest()
2616 bvect::rs_index_type rsi; in RankFindTest()
2637 bvect::rs_index_type rs_idx; in RankFindTest()
2662 bvect::rs_index_type bc_arr1; in RankFindTest()
6542 bvect::rs_index_type bc; in TestRankCompress()
6577 bvect::rs_index_type bc; in TestRankCompress()
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H A Dstress32.cpp1833 bvect::rs_index_type bc_arr; in CheckCountRange()
1914 std::unique_ptr<bvect::rs_index_type> bc_arr2(new bvect::rs_index_type); in CheckCountRange()
4303 bvect::rs_index_type bc_arr; in BasicFunctionalityTest()
4304 bvect::rs_index_type bc_arr1; in BasicFunctionalityTest()
4309 bvect::rs_index_type rs_idx; in BasicFunctionalityTest()
4834 bvect::rs_index_type bc_arr1; in RankFindTest()
4863 bvect::rs_index_type rs_idx; in RankFindTest()
4894 bvect::rs_index_type bc_arr1; in RankFindTest()
17156 bvect::rs_index_type bc_arr; in CountRangeTest()
29252 bvect::rs_index_type bc; in TestRankCompress()
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