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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/
H A DSRA_ReadGroup.c64 const NGS_String * run_name; member
105 const NGS_String* run_name, in SRA_ReadGroupInit() argument
117 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in SRA_ReadGroupInit()
133 NGS_StringRelease ( self -> run_name, ctx ); in SRA_ReadGroupWhack()
208 NGS_StringSize ( self -> run_name, ctx ), in SRA_ReadGroupGetRead()
215 NGS_StringSize ( self -> run_name, ctx ), in SRA_ReadGroupGetRead()
305 assert ( run_name != NULL ); in SRA_ReadGroupMake()
309 …"allocating NGS_ReadGroup on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadGroupMake()
314 …tname, sizeof instname, NULL, "%.*s", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadGroupMake()
355 assert ( run_name != NULL ); in SRA_ReadGroupIteratorMake()
[all …]
H A DSRA_DB_ReadCollection.c71 const NGS_String * run_name; member
85 NGS_StringRelease ( self -> run_name, ctx ); in SRA_DB_ReadCollectionWhack()
92 return NGS_StringDuplicate ( self -> run_name, ctx ); in SRA_DB_ReadCollectionGetName()
207 … NGS_AlignmentMakeNull ( ctx, NGS_StringData(self -> run_name, ctx), NGS_StringSize(self -> run_na… in SRA_DB_ReadCollectionGetAlignments()
234 … NGS_AlignmentMakeNull ( ctx, NGS_StringData(self -> run_name, ctx), NGS_StringSize(self -> run_na… in SRA_DB_ReadCollectionGetAlignmentRange()
244 return NGS_ReadMakeNull ( ctx, self -> run_name ); in SRA_DB_ReadCollectionGetReads()
265 if ( string_cmp ( NGS_StringData ( self -> run_name, ctx ), in SRA_DB_ReadCollectionGetRead()
266 NGS_StringSize ( self -> run_name, ctx ), in SRA_DB_ReadCollectionGetRead()
273 NGS_StringSize ( self -> run_name, ctx ), in SRA_DB_ReadCollectionGetRead()
274 NGS_StringData ( self -> run_name, ctx ), in SRA_DB_ReadCollectionGetRead()
[all …]
H A DCSRA1_ReadCollection.c82 const NGS_String * run_name; member
129 NGS_StringRelease ( self -> run_name, ctx ); in CSRA1_ReadCollectionWhack()
210 return NGS_StringDuplicate ( self -> run_name, ctx ); in CSRA1_ReadCollectionGetName()
377 if ( string_cmp ( NGS_StringData ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetAlignment()
378 NGS_StringSize ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetAlignment()
385 NGS_StringSize ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetAlignment()
386 NGS_StringData ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetAlignment()
392 …ake ( ctx, self, id . rowId, NGS_StringData( self -> run_name, ctx ), NGS_StringSize( self->run_na… in CSRA1_ReadCollectionGetAlignment()
474 NGS_StringSize ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetRead()
481 NGS_StringSize ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetRead()
[all …]
H A DCSRA1_Read.c110 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in CSRA1_ReadInit()
140 const NGS_String * run_name, in CSRA1_ReadIteratorInit() argument
154 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in CSRA1_ReadIteratorInit()
168 const NGS_String * run_name, in CSRA1_ReadIteratorMake() argument
182 …cating CSRA1_ReadIterator on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadIteratorMake()
187 …tname, sizeof instname, NULL, "%.*s", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadIteratorMake()
216 const NGS_String * run_name, in CSRA1_ReadIteratorMakeRange() argument
232 …cating CSRA1_ReadIterator on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadIteratorMakeRange()
237 …tname, sizeof instname, NULL, "%.*s", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadIteratorMakeRange()
308 …ing SRA_Read(%lu) on '%.*s'", readId, NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadMake()
[all …]
H A DSRA_ReadCollection.c67 const NGS_String * run_name; member
77 NGS_StringRelease ( self -> run_name, ctx ); in SRA_ReadCollectionWhack()
86 return NGS_StringDuplicate ( self -> run_name, ctx ); in SRA_ReadCollectionGetName()
195 … NGS_AlignmentMakeNull ( ctx, NGS_StringData(self -> run_name, ctx), NGS_StringSize(self -> run_na… in SRA_ReadCollectionGetAlignments()
224 … NGS_AlignmentMakeNull ( ctx, NGS_StringData(self -> run_name, ctx), NGS_StringSize(self -> run_na… in SRA_ReadCollectionGetAlignmentRange()
234 return NGS_ReadMakeNull ( ctx, self -> run_name ); in SRA_ReadCollectionGetReads()
255 if ( string_cmp ( NGS_StringData ( self -> run_name, ctx ), in SRA_ReadCollectionGetRead()
256 NGS_StringSize ( self -> run_name, ctx ), in SRA_ReadCollectionGetRead()
263 NGS_StringSize ( self -> run_name, ctx ), in SRA_ReadCollectionGetRead()
264 NGS_StringData ( self -> run_name, ctx ), in SRA_ReadCollectionGetRead()
[all …]
H A DSRA_Read.c115 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in SRA_ReadInit()
130 const NGS_String * run_name, in SRA_ReadIteratorInit() argument
143 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in SRA_ReadIteratorInit()
160 NGS_StringRelease ( self -> run_name, ctx ); in SRA_ReadWhack()
229 …ing SRA_Read(%lu) on '%.*s'", readId, NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadMake()
234 …, sizeof instname, NULL, "%.*s(%lu)", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadMake()
568 …locating NGS_ReadIterator on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadIteratorMake()
573 …tname, sizeof instname, NULL, "%.*s", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadIteratorMake()
600 const NGS_String * run_name, in SRA_ReadIteratorMakeRange() argument
615 …locating NGS_ReadIterator on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadIteratorMakeRange()
[all …]
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/
H A DSRA_ReadGroup.c64 const NGS_String * run_name; member
105 const NGS_String* run_name, in SRA_ReadGroupInit() argument
117 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in SRA_ReadGroupInit()
133 NGS_StringRelease ( self -> run_name, ctx ); in SRA_ReadGroupWhack()
208 NGS_StringSize ( self -> run_name, ctx ), in SRA_ReadGroupGetRead()
215 NGS_StringSize ( self -> run_name, ctx ), in SRA_ReadGroupGetRead()
305 assert ( run_name != NULL ); in SRA_ReadGroupMake()
309 …"allocating NGS_ReadGroup on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadGroupMake()
314 …tname, sizeof instname, NULL, "%.*s", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadGroupMake()
355 assert ( run_name != NULL ); in SRA_ReadGroupIteratorMake()
[all …]
H A DSRA_DB_ReadCollection.c71 const NGS_String * run_name; member
85 NGS_StringRelease ( self -> run_name, ctx ); in SRA_DB_ReadCollectionWhack()
92 return NGS_StringDuplicate ( self -> run_name, ctx ); in SRA_DB_ReadCollectionGetName()
207 … NGS_AlignmentMakeNull ( ctx, NGS_StringData(self -> run_name, ctx), NGS_StringSize(self -> run_na… in SRA_DB_ReadCollectionGetAlignments()
234 … NGS_AlignmentMakeNull ( ctx, NGS_StringData(self -> run_name, ctx), NGS_StringSize(self -> run_na… in SRA_DB_ReadCollectionGetAlignmentRange()
244 return NGS_ReadMakeNull ( ctx, self -> run_name ); in SRA_DB_ReadCollectionGetReads()
265 if ( string_cmp ( NGS_StringData ( self -> run_name, ctx ), in SRA_DB_ReadCollectionGetRead()
266 NGS_StringSize ( self -> run_name, ctx ), in SRA_DB_ReadCollectionGetRead()
273 NGS_StringSize ( self -> run_name, ctx ), in SRA_DB_ReadCollectionGetRead()
274 NGS_StringData ( self -> run_name, ctx ), in SRA_DB_ReadCollectionGetRead()
[all …]
H A DCSRA1_ReadCollection.c82 const NGS_String * run_name; member
129 NGS_StringRelease ( self -> run_name, ctx ); in CSRA1_ReadCollectionWhack()
210 return NGS_StringDuplicate ( self -> run_name, ctx ); in CSRA1_ReadCollectionGetName()
377 if ( string_cmp ( NGS_StringData ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetAlignment()
378 NGS_StringSize ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetAlignment()
385 NGS_StringSize ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetAlignment()
386 NGS_StringData ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetAlignment()
392 …ake ( ctx, self, id . rowId, NGS_StringData( self -> run_name, ctx ), NGS_StringSize( self->run_na… in CSRA1_ReadCollectionGetAlignment()
474 NGS_StringSize ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetRead()
481 NGS_StringSize ( self -> run_name, ctx ), in CSRA1_ReadCollectionGetRead()
[all …]
H A DCSRA1_Read.c110 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in CSRA1_ReadInit()
140 const NGS_String * run_name, in CSRA1_ReadIteratorInit() argument
154 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in CSRA1_ReadIteratorInit()
168 const NGS_String * run_name, in CSRA1_ReadIteratorMake() argument
182 …cating CSRA1_ReadIterator on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadIteratorMake()
187 …tname, sizeof instname, NULL, "%.*s", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadIteratorMake()
216 const NGS_String * run_name, in CSRA1_ReadIteratorMakeRange() argument
232 …cating CSRA1_ReadIterator on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadIteratorMakeRange()
237 …tname, sizeof instname, NULL, "%.*s", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadIteratorMakeRange()
308 …ing SRA_Read(%lu) on '%.*s'", readId, NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in CSRA1_ReadMake()
[all …]
H A DSRA_ReadCollection.c67 const NGS_String * run_name; member
77 NGS_StringRelease ( self -> run_name, ctx ); in SRA_ReadCollectionWhack()
86 return NGS_StringDuplicate ( self -> run_name, ctx ); in SRA_ReadCollectionGetName()
195 … NGS_AlignmentMakeNull ( ctx, NGS_StringData(self -> run_name, ctx), NGS_StringSize(self -> run_na… in SRA_ReadCollectionGetAlignments()
224 … NGS_AlignmentMakeNull ( ctx, NGS_StringData(self -> run_name, ctx), NGS_StringSize(self -> run_na… in SRA_ReadCollectionGetAlignmentRange()
234 return NGS_ReadMakeNull ( ctx, self -> run_name ); in SRA_ReadCollectionGetReads()
255 if ( string_cmp ( NGS_StringData ( self -> run_name, ctx ), in SRA_ReadCollectionGetRead()
256 NGS_StringSize ( self -> run_name, ctx ), in SRA_ReadCollectionGetRead()
263 NGS_StringSize ( self -> run_name, ctx ), in SRA_ReadCollectionGetRead()
264 NGS_StringData ( self -> run_name, ctx ), in SRA_ReadCollectionGetRead()
[all …]
H A DSRA_Read.c115 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in SRA_ReadInit()
130 const NGS_String * run_name, in SRA_ReadIteratorInit() argument
143 TRY ( self -> run_name = NGS_StringDuplicate ( run_name, ctx ) ) in SRA_ReadIteratorInit()
160 NGS_StringRelease ( self -> run_name, ctx ); in SRA_ReadWhack()
229 …ing SRA_Read(%lu) on '%.*s'", readId, NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadMake()
234 …, sizeof instname, NULL, "%.*s(%lu)", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadMake()
568 …locating NGS_ReadIterator on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadIteratorMake()
573 …tname, sizeof instname, NULL, "%.*s", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadIteratorMake()
600 const NGS_String * run_name, in SRA_ReadIteratorMakeRange() argument
615 …locating NGS_ReadIterator on '%.*s'", NGS_StringSize ( run_name, ctx ), NGS_StringData ( run_name,… in SRA_ReadIteratorMakeRange()
[all …]
/dports/lang/v8/v8-9.6.180.12/tools/
H A Dperf-compare.py144 def getResult(self, run_name): argument
145 return self.runs_.get(run_name)
147 def appendResult(self, run_name, trace): argument
337 for run_name in run_names:
340 main_run = run_name
408 run_name = json_file_list[0]
409 if run_name.endswith(".json"):
411 run_name = os.path.splitext(run_name)[0]
421 run_names[run_name] = 0
457 for run_name in run_names:
[all …]
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/v8/tools/
H A Dperf-compare.py144 def getResult(self, run_name): argument
145 return self.runs_.get(run_name)
147 def appendResult(self, run_name, trace): argument
337 for run_name in run_names:
340 main_run = run_name
408 run_name = json_file_list[0]
409 if run_name.endswith(".json"):
411 run_name = os.path.splitext(run_name)[0]
421 run_names[run_name] = 0
457 for run_name in run_names:
[all …]
/dports/www/chromium-legacy/chromium-88.0.4324.182/v8/tools/
H A Dperf-compare.py144 def getResult(self, run_name): argument
145 return self.runs_.get(run_name)
147 def appendResult(self, run_name, trace): argument
337 for run_name in run_names:
340 main_run = run_name
408 run_name = json_file_list[0]
409 if run_name.endswith(".json"):
411 run_name = os.path.splitext(run_name)[0]
421 run_names[run_name] = 0
457 for run_name in run_names:
[all …]
/dports/www/node10/node-v10.24.1/deps/v8/tools/
H A Dperf-compare.py141 def getResult(self, run_name): argument
142 return self.runs_.get(run_name)
144 def appendResult(self, run_name, trace): argument
334 for run_name in run_names:
337 main_run = run_name
405 run_name = json_file_list[0]
406 if run_name.endswith(".json"):
408 run_name = os.path.splitext(run_name)[0]
418 run_names[run_name] = 0
454 for run_name in run_names:
[all …]
/dports/databases/py-sqlite3/Python-3.8.12/Lib/
H A Drunpy.py198 run_name=None, alter_sys=False): argument
204 if run_name is None:
205 run_name = mod_name
231 def _get_code_from_file(run_name, fname): argument
242 def run_path(path_name, init_globals=None, run_name=None): argument
252 if run_name is None:
253 run_name = "<run_path>"
254 pkg_name = run_name.rpartition(".")[0]
264 code, fname = _get_code_from_file(run_name, path_name)
265 return _run_module_code(code, init_globals, run_name,
[all …]
/dports/databases/py-gdbm/Python-3.8.12/Lib/
H A Drunpy.py198 run_name=None, alter_sys=False): argument
204 if run_name is None:
205 run_name = mod_name
231 def _get_code_from_file(run_name, fname): argument
242 def run_path(path_name, init_globals=None, run_name=None): argument
252 if run_name is None:
253 run_name = "<run_path>"
254 pkg_name = run_name.rpartition(".")[0]
264 code, fname = _get_code_from_file(run_name, path_name)
265 return _run_module_code(code, init_globals, run_name,
[all …]
/dports/lang/python310/Python-3.10.1/Lib/
H A Drunpy.py200 run_name=None, alter_sys=False): argument
206 if run_name is None:
207 run_name = mod_name
233 def _get_code_from_file(run_name, fname): argument
245 def run_path(path_name, init_globals=None, run_name=None): argument
255 if run_name is None:
256 run_name = "<run_path>"
257 pkg_name = run_name.rpartition(".")[0]
268 code, fname = _get_code_from_file(run_name, path_name)
269 return _run_module_code(code, init_globals, run_name,
[all …]
/dports/lang/python37/Python-3.7.12/Lib/
H A Drunpy.py196 run_name=None, alter_sys=False): argument
202 if run_name is None:
203 run_name = mod_name
229 def _get_code_from_file(run_name, fname): argument
239 def run_path(path_name, init_globals=None, run_name=None): argument
249 if run_name is None:
250 run_name = "<run_path>"
251 pkg_name = run_name.rpartition(".")[0]
261 code, fname = _get_code_from_file(run_name, path_name)
262 return _run_module_code(code, init_globals, run_name,
[all …]
/dports/lang/python-tools/Python-3.8.12/Lib/
H A Drunpy.py198 run_name=None, alter_sys=False): argument
204 if run_name is None:
205 run_name = mod_name
231 def _get_code_from_file(run_name, fname): argument
242 def run_path(path_name, init_globals=None, run_name=None): argument
252 if run_name is None:
253 run_name = "<run_path>"
254 pkg_name = run_name.rpartition(".")[0]
264 code, fname = _get_code_from_file(run_name, path_name)
265 return _run_module_code(code, init_globals, run_name,
[all …]
/dports/lang/python39/Python-3.9.9/Lib/
H A Drunpy.py201 run_name=None, alter_sys=False): argument
207 if run_name is None:
208 run_name = mod_name
234 def _get_code_from_file(run_name, fname): argument
245 def run_path(path_name, init_globals=None, run_name=None): argument
255 if run_name is None:
256 run_name = "<run_path>"
257 pkg_name = run_name.rpartition(".")[0]
267 code, fname = _get_code_from_file(run_name, path_name)
268 return _run_module_code(code, init_globals, run_name,
[all …]
/dports/x11-toolkits/py-tkinter/Python-3.8.12/Lib/
H A Drunpy.py198 run_name=None, alter_sys=False): argument
204 if run_name is None:
205 run_name = mod_name
231 def _get_code_from_file(run_name, fname): argument
242 def run_path(path_name, init_globals=None, run_name=None): argument
252 if run_name is None:
253 run_name = "<run_path>"
254 pkg_name = run_name.rpartition(".")[0]
264 code, fname = _get_code_from_file(run_name, path_name)
265 return _run_module_code(code, init_globals, run_name,
[all …]
/dports/lang/python311/Python-3.11.0a3/Lib/
H A Drunpy.py200 run_name=None, alter_sys=False): argument
206 if run_name is None:
207 run_name = mod_name
233 def _get_code_from_file(run_name, fname): argument
245 def run_path(path_name, init_globals=None, run_name=None): argument
255 if run_name is None:
256 run_name = "<run_path>"
257 pkg_name = run_name.rpartition(".")[0]
268 code, fname = _get_code_from_file(run_name, path_name)
269 return _run_module_code(code, init_globals, run_name,
[all …]
/dports/lang/python38/Python-3.8.12/Lib/
H A Drunpy.py198 run_name=None, alter_sys=False): argument
204 if run_name is None:
205 run_name = mod_name
231 def _get_code_from_file(run_name, fname): argument
242 def run_path(path_name, init_globals=None, run_name=None): argument
252 if run_name is None:
253 run_name = "<run_path>"
254 pkg_name = run_name.rpartition(".")[0]
264 code, fname = _get_code_from_file(run_name, path_name)
265 return _run_module_code(code, init_globals, run_name,
[all …]

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