Searched refs:saBeg (Results 1 – 8 of 8) sorted by relevance
/dports/biology/seqan1/seqan-1.3.1/seqan/index/ |
H A D | index_dfi.h | 258 TSAIterator saBeg = begin(sa, Standard()); in _sortFirstWotdBucket() local 280 *(saBeg + (*(boundBeg + ord))++) = localPos; in _sortFirstWotdBucket() 405 TSAIterator saBeg = begin(sa, Standard()); in _sortWotdBucket() local 426 *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; in _sortWotdBucket() 429 *(saBeg + index.sentinelBound++) = *itSA; in _sortWotdBucket()
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H A D | index_wotd.h | 1101 TSAIterator saBeg = begin(sa, Standard()); 1107 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = i; 1148 TSAIterator saBeg = begin(sa, Standard()); 1160 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = localPos; 1224 TSAIterator saBeg = begin(sa, Standard()); 1235 *(saBeg + (*(boundBeg + ordValue(*(itText + saValue))))++) = saValue; 1238 *(saBeg + index.sentinelBound++) = saValue; 1335 TSAIterator saBeg = begin(sa, Standard()); 1349 *(saBeg + index.sentinelBound++) = saValue; 1406 TSAIterator saBeg = begin(sa, Standard()); [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/index/ |
H A D | index_dfi.h | 350 TSAIterator saBeg = begin(sa, Standard()); in _sortFirstWotdBucket() local 372 *(saBeg + (*(boundBeg + ord))++) = localPos; in _sortFirstWotdBucket() 496 TSAIterator saBeg = begin(sa, Standard()); in _sortWotdBucket() local 517 *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; in _sortWotdBucket() 520 *(saBeg + index.sentinelBound++) = *itSA; in _sortWotdBucket()
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H A D | index_wotd.h | 1193 TSAIterator saBeg = begin(sa, Standard()); 1199 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = i; 1238 TSAIterator saBeg = begin(sa, Standard()); 1250 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = localPos; 1314 TSAIterator saBeg = begin(sa, Standard()); 1325 *(saBeg + (*(boundBeg + ordValue(*(itText + saValue))))++) = saValue; 1328 *(saBeg + index.sentinelBound++) = saValue; 1425 TSAIterator saBeg = begin(sa, Standard()); 1439 *(saBeg + index.sentinelBound++) = saValue; 1497 TSAIterator saBeg = begin(sa, Standard()); [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/index/ |
H A D | index_dfi.h | 350 TSAIterator saBeg = begin(sa, Standard()); in _sortFirstWotdBucket() local 372 *(saBeg + (*(boundBeg + ord))++) = localPos; in _sortFirstWotdBucket() 496 TSAIterator saBeg = begin(sa, Standard()); in _sortWotdBucket() local 517 *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; in _sortWotdBucket() 520 *(saBeg + index.sentinelBound++) = *itSA; in _sortWotdBucket()
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H A D | index_wotd.h | 1193 TSAIterator saBeg = begin(sa, Standard()); 1199 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = i; 1238 TSAIterator saBeg = begin(sa, Standard()); 1250 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = localPos; 1314 TSAIterator saBeg = begin(sa, Standard()); 1325 *(saBeg + (*(boundBeg + ordValue(*(itText + saValue))))++) = saValue; 1328 *(saBeg + index.sentinelBound++) = saValue; 1425 TSAIterator saBeg = begin(sa, Standard()); 1439 *(saBeg + index.sentinelBound++) = saValue; 1497 TSAIterator saBeg = begin(sa, Standard()); [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/index/ |
H A D | index_dfi.h | 337 TSAIterator saBeg = begin(sa, Standard()); in _sortFirstWotdBucket() local 359 *(saBeg + (*(boundBeg + ord))++) = localPos; in _sortFirstWotdBucket() 484 TSAIterator saBeg = begin(sa, Standard()); in _sortWotdBucket() local 505 *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; in _sortWotdBucket() 508 *(saBeg + index.sentinelBound++) = *itSA; in _sortWotdBucket()
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H A D | index_wotd.h | 1181 TSAIterator saBeg = begin(sa, Standard()); 1187 *(saBeg + (*(boundBeg + ordValue(getValue(itText))))++) = i; 1226 TSAIterator saBeg = begin(sa, Standard()); 1238 *(saBeg + (*(boundBeg + ordValue(getValue(itText))))++) = localPos; 1302 TSAIterator saBeg = begin(sa, Standard()); 1313 *(saBeg + (*(boundBeg + ordValue(*(itText + saValue))))++) = saValue; 1316 *(saBeg + index.sentinelBound++) = saValue; 1413 TSAIterator saBeg = begin(sa, Standard()); 1427 *(saBeg + index.sentinelBound++) = saValue; 1485 TSAIterator saBeg = begin(sa, Standard()); [all …]
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