Home
last modified time | relevance | path

Searched refs:saBeg (Results 1 – 8 of 8) sorted by relevance

/dports/biology/seqan1/seqan-1.3.1/seqan/index/
H A Dindex_dfi.h258 TSAIterator saBeg = begin(sa, Standard()); in _sortFirstWotdBucket() local
280 *(saBeg + (*(boundBeg + ord))++) = localPos; in _sortFirstWotdBucket()
405 TSAIterator saBeg = begin(sa, Standard()); in _sortWotdBucket() local
426 *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; in _sortWotdBucket()
429 *(saBeg + index.sentinelBound++) = *itSA; in _sortWotdBucket()
H A Dindex_wotd.h1101 TSAIterator saBeg = begin(sa, Standard());
1107 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = i;
1148 TSAIterator saBeg = begin(sa, Standard());
1160 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = localPos;
1224 TSAIterator saBeg = begin(sa, Standard());
1235 *(saBeg + (*(boundBeg + ordValue(*(itText + saValue))))++) = saValue;
1238 *(saBeg + index.sentinelBound++) = saValue;
1335 TSAIterator saBeg = begin(sa, Standard());
1349 *(saBeg + index.sentinelBound++) = saValue;
1406 TSAIterator saBeg = begin(sa, Standard());
[all …]
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/index/
H A Dindex_dfi.h350 TSAIterator saBeg = begin(sa, Standard()); in _sortFirstWotdBucket() local
372 *(saBeg + (*(boundBeg + ord))++) = localPos; in _sortFirstWotdBucket()
496 TSAIterator saBeg = begin(sa, Standard()); in _sortWotdBucket() local
517 *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; in _sortWotdBucket()
520 *(saBeg + index.sentinelBound++) = *itSA; in _sortWotdBucket()
H A Dindex_wotd.h1193 TSAIterator saBeg = begin(sa, Standard());
1199 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = i;
1238 TSAIterator saBeg = begin(sa, Standard());
1250 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = localPos;
1314 TSAIterator saBeg = begin(sa, Standard());
1325 *(saBeg + (*(boundBeg + ordValue(*(itText + saValue))))++) = saValue;
1328 *(saBeg + index.sentinelBound++) = saValue;
1425 TSAIterator saBeg = begin(sa, Standard());
1439 *(saBeg + index.sentinelBound++) = saValue;
1497 TSAIterator saBeg = begin(sa, Standard());
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/index/
H A Dindex_dfi.h350 TSAIterator saBeg = begin(sa, Standard()); in _sortFirstWotdBucket() local
372 *(saBeg + (*(boundBeg + ord))++) = localPos; in _sortFirstWotdBucket()
496 TSAIterator saBeg = begin(sa, Standard()); in _sortWotdBucket() local
517 *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; in _sortWotdBucket()
520 *(saBeg + index.sentinelBound++) = *itSA; in _sortWotdBucket()
H A Dindex_wotd.h1193 TSAIterator saBeg = begin(sa, Standard());
1199 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = i;
1238 TSAIterator saBeg = begin(sa, Standard());
1250 *(saBeg + (*(boundBeg + ordValue(*itText)))++) = localPos;
1314 TSAIterator saBeg = begin(sa, Standard());
1325 *(saBeg + (*(boundBeg + ordValue(*(itText + saValue))))++) = saValue;
1328 *(saBeg + index.sentinelBound++) = saValue;
1425 TSAIterator saBeg = begin(sa, Standard());
1439 *(saBeg + index.sentinelBound++) = saValue;
1497 TSAIterator saBeg = begin(sa, Standard());
[all …]
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/index/
H A Dindex_dfi.h337 TSAIterator saBeg = begin(sa, Standard()); in _sortFirstWotdBucket() local
359 *(saBeg + (*(boundBeg + ord))++) = localPos; in _sortFirstWotdBucket()
484 TSAIterator saBeg = begin(sa, Standard()); in _sortWotdBucket() local
505 *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; in _sortWotdBucket()
508 *(saBeg + index.sentinelBound++) = *itSA; in _sortWotdBucket()
H A Dindex_wotd.h1181 TSAIterator saBeg = begin(sa, Standard());
1187 *(saBeg + (*(boundBeg + ordValue(getValue(itText))))++) = i;
1226 TSAIterator saBeg = begin(sa, Standard());
1238 *(saBeg + (*(boundBeg + ordValue(getValue(itText))))++) = localPos;
1302 TSAIterator saBeg = begin(sa, Standard());
1313 *(saBeg + (*(boundBeg + ordValue(*(itText + saValue))))++) = saValue;
1316 *(saBeg + index.sentinelBound++) = saValue;
1413 TSAIterator saBeg = begin(sa, Standard());
1427 *(saBeg + index.sentinelBound++) = saValue;
1485 TSAIterator saBeg = begin(sa, Standard());
[all …]