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Searched refs:sample_ctv2 (Results 1 – 6 of 6) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_data.c3159 fill_ulong_zero(sample_ctv2, patchbuf); in zeropatch()
3161 bitvec_or(&(cluster_zc_masks[cluster_idx * sample_ctv2]), sample_ctv2, patchbuf); in zeropatch()
7982 uintptr_t sample_ctv2; in vcf_to_bed() local
8564 alt_bitfield = &(base_bitfields[sample_ctv2]); in vcf_to_bed()
9159 uintptr_t sample_ctv2; in bcf_to_bed() local
9691 ulii = ((ulii / 2) - 1) * sample_ctv2; in bcf_to_bed()
9716 ulii = ((ulii / 2) - 1) * sample_ctv2; in bcf_to_bed()
9736 ulii = ((ulii / 2) - 1) * sample_ctv2; in bcf_to_bed()
9760 ulii = ((ulii / 2) - 1) * sample_ctv2; in bcf_to_bed()
9779 ulii = ((ulii / 2) - 1) * sample_ctv2; in bcf_to_bed()
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H A Dplink_ld.c11404 bigstack_alloc_ul(sample_ctv2 * 3, &loadbuf) || in test_mishap()
11406 bigstack_alloc_ul(sample_ctv2, &maskbuf)) { in test_mishap()
11410 loadbuf[sample_ctv2 - 2] = 0; in test_mishap()
11411 loadbuf[sample_ctv2 - 1] = 0; in test_mishap()
11412 loadbuf[2 * sample_ctv2 - 2] = 0; in test_mishap()
11413 loadbuf[2 * sample_ctv2 - 1] = 0; in test_mishap()
11414 loadbuf[3 * sample_ctv2 - 2] = 0; in test_mishap()
11415 loadbuf[3 * sample_ctv2 - 1] = 0; in test_mishap()
11416 loadbuf_end = &(loadbuf[sample_ctv2 * 3]); in test_mishap()
11442 cursnp_ptr = &(loadbuf[sample_ctv2]); in test_mishap()
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H A Dplink_assoc.c1092 uintptr_t rem_cost(uintptr_t sample_ctv2, uintptr_t* loadbuf1, uintptr_t* loadbuf2) { in rem_cost() argument
1101 uintptr_t* lptr_end = &(loadbuf1[sample_ctv2]); in rem_cost()
1112 sample_ctv2 -= sample_ctv2 % 6; in rem_cost()
1113 while (sample_ctv2 >= 60) { in rem_cost()
1119 sample_ctv2 -= cur_decr; in rem_cost()
1121 if (sample_ctv2) { in rem_cost()
1122 cur_decr = sample_ctv2; in rem_cost()
1126 uintptr_t* lptr_six_end = &(loadbuf1[sample_ctv2 - (sample_ctv2 % 6)]); in rem_cost()
H A Dplink_common.c4236 uintptr_t sample_ctv2 = QUATERCT_TO_ALIGNED_WORDCT(sample_ct); in alloc_collapsed_haploid_filters() local
4240 if (bigstack_alloc_ul(sample_ctv2, sample_include_quatervec_ptr)) { in alloc_collapsed_haploid_filters()
4250 if (bigstack_alloc_ul(sample_ctv2, sample_male_include_quatervec_ptr)) { in alloc_collapsed_haploid_filters()
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_common.cc596 const uint32_t sample_ctv2 = NypCtToVecCt(sample_ct); in GenoarrCountMissingSubset() local
599 uint32_t vec_idx = sample_ctv2 - (sample_ctv2 % 6); in GenoarrCountMissingSubset()
608 for (; vec_idx != sample_ctv2; ++vec_idx) { in GenoarrCountMissingSubset()
644 for (; vec_idx != sample_ctv2; ++vec_idx) { in GenoarrCountMissingSubset()
668 uint32_t word_idx = sample_ctv2 - (sample_ctv2 % 6); in GenoarrCountMissingSubset()
672 for (; word_idx != sample_ctv2; ++word_idx) { in GenoarrCountMissingSubset()
H A Dplink2_data.cc4720 const uint32_t sample_ctv2 = NypCtToVecCt(sample_ct); in MakeBedlikeThread() local
4799 SetMaleHetMissing(sex_male_collapsed_interleaved, sample_ctv2, genovec); in MakeBedlikeThread()
4804 InterleavedSetMissing(sex_female_collapsed_interleaved, sample_ctv2, genovec); in MakeBedlikeThread()
5124 const uint32_t sample_ctv2 = NypCtToVecCt(sample_ct); in MakePgenThread() local
5536 …MissingCleardosage(sex_male_collapsed, sex_male_collapsed_interleaved, sample_ctv2, write_genovec,… in MakePgenThread()
5599 …ingCleardosage(sex_female_collapsed, sex_female_collapsed_interleaved, sample_ctv2, write_genovec,… in MakePgenThread()