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Searched refs:saps (Results 1 – 25 of 246) sorted by relevance

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/dports/graphics/leptonica/leptonica-1.76.0/prog/
H A Dconcatpdf.c74 SARRAY *sa, *saps; in main() local
93 saps = sarrayCreate(n); in main()
103 sarrayAddString(saps, buf, L_COPY); in main()
115 sarrayWriteStream(stderr, saps); in main()
116 n = sarrayGetCount(saps); in main()
118 fname = sarrayGetString(saps, i, L_NOCOPY); in main()
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dspidey.c3358 amaip->saps[i]->next = amaip->saps[i+1]; in SPI_FindWindows()
3998 amaip->saps[i]->next = amaip->saps[i+1]; in SPI_CheckForPolyAExon()
4173 amaip->saps[j-1] = amaip->saps[j]; in SPI_ConnectAln()
5114 amaip->saps[i+1] = SPI_MergeAlignments(amaip->saps[i], amaip->saps[i+1]); in SPI_AdjustForSplice()
5134 amaip->saps[i+1] = amaip->saps[i]; in SPI_AdjustForSplice()
5194 smp_new->saps[count] = smp->saps[i]; in SPI_AdjustForSplice()
5211 smp->saps[i] = amaip->saps[i]; in SPI_AdjustForSplice()
5257 amaip->saps = smp->saps; in SPI_AdjustForSplice()
5260 amaip->saps[i]->next = amaip->saps[i+1]; in SPI_AdjustForSplice()
9164 amaip->saps[j]->next = amaip->saps[j+1]; in SPI_OrderInternally()
[all …]
H A Dactutils.c1769 salp = amaip->saps[i]; in ACT_RemoveInconsistentAlnsFromSet()
1795 salp = amaip->saps[k]; in ACT_RemoveInconsistentAlnsFromSet()
1798 amaip->saps[k] = NULL; in ACT_RemoveInconsistentAlnsFromSet()
1808 amaip->saps[k - 1]->next = amaip->saps[k + 1]; in ACT_RemoveInconsistentAlnsFromSet()
1933 if (amaip->saps[i] != NULL) in ACT_RemoveInconsistentAlnsFromSet()
1935 amaip->saps[i]->next = NULL; in ACT_RemoveInconsistentAlnsFromSet()
1938 salp_prev->next = amaip->saps[i]; in ACT_RemoveInconsistentAlnsFromSet()
2355 dsp_tmp = (DenseSegPtr)(saps[i]->segs); in ACT_CreateContinuousAln()
2367 dsp_tmp = (DenseSegPtr)(saps[i]->segs); in ACT_CreateContinuousAln()
2399 amaip->saps[i] = SeqAlignFree (amaip->saps[i]); in DeleteAmaipSapI()
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H A Dspidey.h256 SeqAlignPtr PNTR saps; /*indexed alignments for exons */ member
368 SeqAlignPtr PNTR saps; /* indexed alignments, one for each piece (not exon) */ member
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dalignmgr.c789 MemFree(amadp->saps); in AMAlignDatFree()
1638 amadp->saps[i] = amadp->saps[i+notfound]; in AlnMgrIndexParentSA()
2262 amaip->saps[i-1]->next = amaip->saps[i]; in AlnMgrMakeMultipleByScoreExEx()
2476 if (amaip->saps) in am_print_seqalign_indexes()
3756 if (!amaip->saps) in AlnMgrGetAlnLength()
5294 amaip->saps[j] = amadp->saps[j]; in AlnMgrMakeFakeMultipleEx()
7092 if (!amaip->saps) in AlnMgrMakeAlignCoords()
7589 if (amaip->saps) in AlnMgrCheckOrdered()
8754 amaip->saps[j] = amadp->saps[j]; in AlnMgrForceMasterSlave()
9970 amaip->saps[i]->next = amaip->saps[i+1]; in AlnMgrDeleteHiddenEx()
[all …]
H A Dalignmgr2.c518 MemFree(amaip->saps); in AMAlignIndex2Free2()
549 amaip2->saps[i] = SeqAlignDup(amaip->saps[i]); in AMAlignIndex2Copy()
552 amaip2->saps[i-1]->next = amaip2->saps[i]; in AMAlignIndex2Copy()
1187 amaip->saps[i] = salp; in AlnMgr2IndexLite()
1819 HeapSort(amaip->saps, amaip->numsaps, sizeof(amaip->saps), AlnMgr2CompareIds); in AlnMgr2SortBySeqId()
3142 MemFree(amaip->saps); in AlnMgr2AddInNewPairwiseSA()
3144 amaip->saps[0] = sap; in AlnMgr2AddInNewPairwiseSA()
3607 MemFree(amaip->saps); in AlnMgr2AddInNewSA()
3609 amaip->saps[0] = sap; in AlnMgr2AddInNewSA()
3621 saptmp = amaip->saps; in AlnMgr2AddInNewSA()
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/dports/lang/sbcl/sbcl-1.3.13/tests/
H A Dstatic-alloc.impure.lisp8 (saps (mapcar #'sb-sys:vector-sap vectors)))
11 saps
/dports/biology/ncbi-toolkit/ncbi/ddv/
H A Dddvopen.c2505 dsp1 = (DenseSegPtr)(amaip->saps[i]->segs); in ddv_truncate_overlaps()
2506 dsp2 = (DenseSegPtr)(amaip->saps[i+1]->segs); in ddv_truncate_overlaps()
2513 SAIndexFree(amaip->saps[i]->saip); in ddv_truncate_overlaps()
2514 SAIndexFree(amaip->saps[i+1]->saip); in ddv_truncate_overlaps()
2515 amaip->saps[i]->saip = amaip->saps[i+1]->saip = NULL; in ddv_truncate_overlaps()
2523 dsp1 = (DenseSegPtr)(amaip->saps[i]->segs); in ddv_truncate_overlaps()
2531 SAIndexFree(amaip->saps[i]->saip); in ddv_truncate_overlaps()
2532 SAIndexFree(amaip->saps[i+1]->saip); in ddv_truncate_overlaps()
2533 amaip->saps[i]->saip = amaip->saps[i+1]->saip = NULL; in ddv_truncate_overlaps()
2544 dsp1 = (DenseSegPtr)(amaip->saps[i]->segs); in ddv_truncate_overlaps()
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/dports/net-mgmt/librenms/librenms-21.5.1/LibreNMS/OS/
H A DTimos.php286 $saps = collect();
303 $saps->push(new MplsSap([
323 return $saps;
635 $saps = collect();
655 $saps->push(new MplsSap([
695 return $saps;
/dports/games/freeciv/freeciv-2.6.6/doc/ca/
H A DBUGS.ca54 - Si fas servir el client GTK+, els números de versió (si els saps)
57 - Si fas servir el client SDL, els números de versió (si els saps)
60 - Si fas servir el client Xaw, els números de versió (si els saps)
/dports/games/freeciv-nox11/freeciv-2.6.6/doc/ca/
H A DBUGS.ca54 - Si fas servir el client GTK+, els números de versió (si els saps)
57 - Si fas servir el client SDL, els números de versió (si els saps)
60 - Si fas servir el client Xaw, els números de versió (si els saps)
/dports/devel/hadoop2/hadoop-2.7.2-src/hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-sharedcachemanager/src/main/java/org/apache/hadoop/yarn/server/sharedcachemanager/
H A DSharedCacheManager.java78 SCMAdminProtocolService saps = createSCMAdminProtocolService(cs); in serviceInit() local
79 addService(saps); in serviceInit()
/dports/devel/py-cclib/cclib-1.7.1/data/GAMESS/basicGAMESS-US2018/
H A Dwater_cis_saps.inp4 $cis hamtyp=saps nstate=5 $end
/dports/devel/py-cclib/cclib-1.7.1/data/GAMESS/basicGAMESS-US2017/
H A Dwater_cis_saps.inp4 $cis hamtyp=saps nstate=5 $end
/dports/biology/ncbi-toolkit/ncbi/desktop/
H A Ddotvibrant.c5787 SeqAlignPtr PNTR saps; in DOT_GetNthSeqIdFromScp() local
5790 if (scp->saps != NULL) in DOT_GetNthSeqIdFromScp()
5791 saps=scp->saps; in DOT_GetNthSeqIdFromScp()
5793 saps=scp->large_outliers; in DOT_GetNthSeqIdFromScp()
5795 saps=scp->small_outliers; in DOT_GetNthSeqIdFromScp()
5852 if (scp->saps){ in DOT_FillFromScp()
6897 salp = amaip->saps[i]; in SCP_OrganizeAlnsInSet()
6915 salp = amaip->saps[i]; in SCP_OrganizeAlnsInSet()
6943 salp = amaip->saps[spin[0]->n1]; in SCP_OrganizeAlnsInSet()
7064 scp->saps[i] = keep; in SCP_OrganizeAlnsInSet()
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H A Dingenext.c191 if (scp->saps[i] != NULL) in Ing_KeepTheBestAlignments()
193 scp->saps[i]->next = NULL; in Ing_KeepTheBestAlignments()
197 salp_prev->next = scp->saps[i]; in Ing_KeepTheBestAlignments()
200 salp_head = salp_prev = scp->saps[i]; in Ing_KeepTheBestAlignments()
204 SeqAlignFree(scp->saps[i]); in Ing_KeepTheBestAlignments()
2642 if (spidp->saps[j] == sap) in Ing_ReplaceAllMismatchedInLocation()
2649 sap_exon = spidp->saps[exon_count - 1]; in Ing_ReplaceAllMismatchedInLocation()
2737 sap_exon = spidp->saps[i]; in Ing_ReplaceAllMismatchedInLocation()
3868 sip=AlnMgr2GetNthSeqIdPtr(amaip->saps[0], 2); in Ing_PrintBlastReport()
3941 salp = amaip->saps[j]; in Ing_PrintBlastReport()
[all …]
/dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/FileParsers/
H A DMolSGroupWriting.cpp376 const std::vector<SubstanceGroup::AttachPoint> saps = in BuildV2000SAPLines() local
381 for (const auto &sap : saps) { in BuildV2000SAPLines()
620 const std::vector<SubstanceGroup::AttachPoint> &saps) { in FormatV3000AttachPointBlock() argument
623 for (const auto &sap : saps) { in FormatV3000AttachPointBlock()
/dports/www/mnogosearch/mnogosearch-3.4.1/etc/stopwords/
H A Dct.sl105 saps
/dports/net/ns3/ns-allinone-3.35/ns-3.35/src/lte/doc/
H A DMakefile25 $(FIGURES)/ff-mac-saps.dia \
63 $(FIGURES)/lte-epc-x2-entity-saps.dia \
101 $(FIGURES)/ff-mac-saps.pdf_width = 5in
/dports/net-mgmt/observium/observium/mibs/aos/
H A DTIMETRA-SAS-SERV-MIB519 "The value of svcSapType specifies the type of saps configured
521 saps are null & star and Network sap is Q.*. If svcSapType
522 is dot1q the allowed access saps is dot1q and Network sap are Q.*.
523 If svcSapType is dot1q-preserve the allowed access saps is dot1q
525 saps are null, dot1q, dot1q explicit null, star and Network
526 sap is Q.*. If svcSapType is dot1q-range, the allowed saps are
527 dot1q-range saps and Q.*"
/dports/devel/libzim/libzim-6.3.2/static/stopwords/
H A Dca208 saps
/dports/x11-clocks/wmcalclock/wmCalClock-1.26/
H A DCHANGES55 bit high, but the poor saps with 8-bit displays can at least run
/dports/misc/cheat/cheat-4.2.2/vendor/github.com/alecthomas/chroma/chroma-0.9.1/lexers/p/
H A Dpowershell.go39 …dr|ren|ri|rjb|rm|rmdir|rmo|rni|rnp|rp|rsn|rsnp|rujb|rv|rvpa|rwmi|sajb|sal|saps|sasv|sbp|sc|select|…
/dports/misc/cheat/cheat-4.2.2/vendor/github.com/alecthomas/chroma/lexers/p/
H A Dpowershell.go39 …dr|ren|ri|rjb|rm|rmdir|rmo|rni|rnp|rp|rsn|rsnp|rujb|rv|rvpa|rwmi|sajb|sal|saps|sasv|sbp|sc|select|…
/dports/www/gitea/gitea-1.16.5/vendor/github.com/alecthomas/chroma/lexers/p/
H A Dpowershell.go39 …dr|ren|ri|rjb|rm|rmdir|rmo|rni|rnp|rp|rsn|rsnp|rujb|rv|rvpa|rwmi|sajb|sal|saps|sasv|sbp|sc|select|…

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