Searched refs:saveBranchLengths (Results 1 – 10 of 10) sorted by relevance
| /dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
| H A D | phylosupertreeunlinked.h | 102 …virtual void saveBranchLengths(DoubleVector &lenvec, int startid = 0, PhyloNode *node = NULL, Phyl…
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| H A D | phylosupertreeunlinked.cpp | 129 void PhyloSuperTreeUnlinked::saveBranchLengths(DoubleVector &lenvec, int startid, PhyloNode *node, … in saveBranchLengths() function in PhyloSuperTreeUnlinked
138 (*it)->saveBranchLengths(lenvec, startid); in saveBranchLengths()
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| H A D | phylosupertree.h | 160 …virtual void saveBranchLengths(DoubleVector &lenvec, int startid = 0, PhyloNode *node = NULL, Phyl…
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| H A D | phylosupertree.cpp | 291 void PhyloSuperTree::saveBranchLengths(DoubleVector &lenvec, int startid, PhyloNode *node, PhyloNod… in saveBranchLengths() function in PhyloSuperTree
300 PhyloTree::saveBranchLengths(lenvec, startid); in saveBranchLengths()
303 (*it)->saveBranchLengths(lenvec, startid); in saveBranchLengths()
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| H A D | phylotree.h | 543 …virtual void saveBranchLengths(DoubleVector &lenvec, int startid = 0, PhyloNode *node = NULL, Phyl…
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| H A D | phylotree.cpp | 685 void PhyloTree::saveBranchLengths(DoubleVector &lenvec, int startid, PhyloNode *node, PhyloNode *da… in saveBranchLengths() function in PhyloTree
693 PhyloTree::saveBranchLengths(lenvec, startid, (PhyloNode*) (*it)->node, node); in saveBranchLengths()
2718 saveBranchLengths(lenvec); in optimizeAllBranches()
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| H A D | iqtree.cpp | 2976 saveBranchLengths(lenvec); in optimizeNNI()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/model/ |
| H A D | modelfactorymixlen.cpp | 67 tree->saveBranchLengths(brlen); in sortClassesByTreeLength()
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| H A D | modelfactory.cpp | 1053 tree->saveBranchLengths(initBranLens); in optimizeParametersGammaInvar()
1100 tree->saveBranchLengths(bestLens); in optimizeParametersGammaInvar()
1147 tree->saveBranchLengths(bestLens); in optimizeParametersGammaInvar()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/main/ |
| H A D | phyloanalysis.cpp | 2903 iqtree.saveBranchLengths(lenvec); in computeLoglFromUserInputGAMMAInvar()
2941 iqtree.saveBranchLengths(lenvec); in searchGAMMAInvarByRestarting()
2974 iqtree.saveBranchLengths(bestLens); in searchGAMMAInvarByRestarting()
3017 iqtree.saveBranchLengths(lenvec); in exhaustiveSearchGAMMAInvar()
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