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12

/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/c/
H A DcreateExampleSBML.c89 SBMLDocument_t* sbmlDoc = NULL; in main() local
99 SBMLDocument_free(sbmlDoc); in main()
109 SBMLDocument_free(sbmlDoc); in main()
119 SBMLDocument_free(sbmlDoc); in main()
152 SBMLDocument_t* sbmlDoc; in createExampleEnzymaticReaction() local
655 return sbmlDoc; in createExampleEnzymaticReaction()
674 SBMLDocument_t* sbmlDoc; in createExampleInvolvingUnits() local
1183 return sbmlDoc; in createExampleInvolvingUnits()
1203 SBMLDocument_t* sbmlDoc; in createExampleInvolvingFunctionDefinitions() local
1416 return sbmlDoc; in createExampleInvolvingFunctionDefinitions()
[all …]
/dports/biology/libsbml/libsbml-5.19.0/examples/c/
H A DcreateExampleSBML.c89 SBMLDocument_t* sbmlDoc = NULL; in main() local
99 SBMLDocument_free(sbmlDoc); in main()
109 SBMLDocument_free(sbmlDoc); in main()
119 SBMLDocument_free(sbmlDoc); in main()
152 SBMLDocument_t* sbmlDoc; in createExampleEnzymaticReaction() local
655 return sbmlDoc; in createExampleEnzymaticReaction()
674 SBMLDocument_t* sbmlDoc; in createExampleInvolvingUnits() local
1183 return sbmlDoc; in createExampleInvolvingUnits()
1203 SBMLDocument_t* sbmlDoc; in createExampleInvolvingFunctionDefinitions() local
1416 return sbmlDoc; in createExampleInvolvingFunctionDefinitions()
[all …]
/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/ruby/
H A DcreateExampleSBML.rb96 model = sbmlDoc.createModel
546 return sbmlDoc;
579 model = sbmlDoc.createModel
1032 return sbmlDoc;
1061 model = sbmlDoc.createModel
1238 return sbmlDoc;
1257 def validateExampleSBML(sbmlDoc) argument
1258 if (sbmlDoc == nil)
1288 sbmlDoc.printErrors
1308 sbmlDoc.printErrors
[all …]
/dports/biology/libsbml/libsbml-5.19.0/examples/ruby/
H A DcreateExampleSBML.rb96 model = sbmlDoc.createModel
546 return sbmlDoc;
579 model = sbmlDoc.createModel
1032 return sbmlDoc;
1061 model = sbmlDoc.createModel
1238 return sbmlDoc;
1257 def validateExampleSBML(sbmlDoc) argument
1258 if (sbmlDoc == nil)
1288 sbmlDoc.printErrors
1308 sbmlDoc.printErrors
[all …]
/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/c++/
H A DcreateExampleSBML.cpp92 SBMLDocument* sbmlDoc = 0; in main() local
104 delete sbmlDoc; in main()
114 delete sbmlDoc; in main()
124 delete sbmlDoc; in main()
179 Model* model = sbmlDoc->createModel(); in createExampleEnzymaticReaction()
650 return sbmlDoc; in createExampleEnzymaticReaction()
1154 return sbmlDoc; in createExampleInvolvingUnits()
1373 return sbmlDoc; in createExampleInvolvingFunctionDefinitions()
1395 if (!sbmlDoc) in validateExampleSBML()
1432 sbmlDoc->printErrors(oss); in validateExampleSBML()
[all …]
/dports/biology/libsbml/libsbml-5.19.0/examples/c++/
H A DcreateExampleSBML.cpp92 SBMLDocument* sbmlDoc = 0; in main() local
104 delete sbmlDoc; in main()
114 delete sbmlDoc; in main()
124 delete sbmlDoc; in main()
179 Model* model = sbmlDoc->createModel(); in createExampleEnzymaticReaction()
650 return sbmlDoc; in createExampleEnzymaticReaction()
1154 return sbmlDoc; in createExampleInvolvingUnits()
1373 return sbmlDoc; in createExampleInvolvingFunctionDefinitions()
1395 if (!sbmlDoc) in validateExampleSBML()
1432 sbmlDoc->printErrors(oss); in validateExampleSBML()
[all …]
/dports/biology/libsbml/libsbml-5.19.0/examples/r/
H A DcreateExampleSBML.R89 sbmlDoc = SBMLDocument(level,version); functionVar
97 model = SBMLDocument_createModel(sbmlDoc);
549 return(sbmlDoc);
571 sbmlDoc = SBMLDocument(level,version); functionVar
1034 return (sbmlDoc);
1055 sbmlDoc = SBMLDocument(level,version); functionVar
1240 return (sbmlDoc);
1287 SBMLDocument_printErrors(sbmlDoc);
1373 SBMLok = validateExampleSBML(sbmlDoc);
1385 SBMLok = validateExampleSBML(sbmlDoc);
[all …]
/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/r/
H A DcreateExampleSBML.R89 sbmlDoc = SBMLDocument(level,version); functionVar
97 model = SBMLDocument_createModel(sbmlDoc);
549 return(sbmlDoc);
571 sbmlDoc = SBMLDocument(level,version); functionVar
1034 return (sbmlDoc);
1055 sbmlDoc = SBMLDocument(level,version); functionVar
1240 return (sbmlDoc);
1287 SBMLDocument_printErrors(sbmlDoc);
1373 SBMLok = validateExampleSBML(sbmlDoc);
1385 SBMLok = validateExampleSBML(sbmlDoc);
[all …]
/dports/biology/libsbml/libsbml-5.19.0/examples/python/
H A DcreateExampleSBML.py98 model = sbmlDoc.createModel()
538 return sbmlDoc
572 model = sbmlDoc.createModel()
1016 return sbmlDoc
1044 model = sbmlDoc.createModel()
1215 return sbmlDoc
1235 def validateExampleSBML(sbmlDoc): argument
1236 if sbmlDoc is None:
1263 sbmlDoc.printErrors()
1281 sbmlDoc.printErrors()
[all …]
H A DvalidateSBML.py61 sbmlDoc = libsbml.readSBML(file)
64 errors = sbmlDoc.getNumErrors()
75 severity = sbmlDoc.getError(i).getSeverity()
82 errMsgRead = sbmlDoc.getErrorLog().toString()
99 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, self.ucheck)
101 failures = sbmlDoc.checkConsistency()
110 severity = sbmlDoc.getError(i).getSeverity()
120 errMsgCC = sbmlDoc.getErrorLog().toString()
H A DvalidateSBMLWithCallback.py87 sbmlDoc = libsbml.readSBML(file)
90 errors = sbmlDoc.getNumErrors()
101 severity = sbmlDoc.getError(i).getSeverity()
108 errMsgRead = sbmlDoc.getErrorLog().toString()
125 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, self.ucheck)
127 failures = sbmlDoc.checkConsistency()
136 severity = sbmlDoc.getError(i).getSeverity()
146 errMsgCC = sbmlDoc.getErrorLog().toString()
/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/python/
H A DcreateExampleSBML.py98 model = sbmlDoc.createModel()
538 return sbmlDoc
572 model = sbmlDoc.createModel()
1016 return sbmlDoc
1044 model = sbmlDoc.createModel()
1215 return sbmlDoc
1235 def validateExampleSBML(sbmlDoc): argument
1236 if sbmlDoc is None:
1263 sbmlDoc.printErrors()
1281 sbmlDoc.printErrors()
[all …]
H A DvalidateSBML.py61 sbmlDoc = libsbml.readSBML(file)
64 errors = sbmlDoc.getNumErrors()
75 severity = sbmlDoc.getError(i).getSeverity()
82 errMsgRead = sbmlDoc.getErrorLog().toString()
99 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, self.ucheck)
101 failures = sbmlDoc.checkConsistency()
110 severity = sbmlDoc.getError(i).getSeverity()
120 errMsgCC = sbmlDoc.getErrorLog().toString()
H A DvalidateSBMLWithCallback.py87 sbmlDoc = libsbml.readSBML(file)
90 errors = sbmlDoc.getNumErrors()
101 severity = sbmlDoc.getError(i).getSeverity()
108 errMsgRead = sbmlDoc.getErrorLog().toString()
125 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, self.ucheck)
127 failures = sbmlDoc.checkConsistency()
136 severity = sbmlDoc.getError(i).getSeverity()
146 errMsgCC = sbmlDoc.getErrorLog().toString()
/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/perl/
H A DcreateExampleSBML.pl107 $model = $sbmlDoc->createModel();
555 return $sbmlDoc;
589 $model = $sbmlDoc->createModel();
1038 return $sbmlDoc;
1240 return $sbmlDoc;
1260 $sbmlDoc = shift();
1261 if ($sbmlDoc == undef) {
1292 $sbmlDoc->printErrors();
1314 $sbmlDoc->printErrors();
1362 $sbmlDoc = $_[0];
[all …]
/dports/biology/libsbml/libsbml-5.19.0/examples/perl/
H A DcreateExampleSBML.pl107 $model = $sbmlDoc->createModel();
555 return $sbmlDoc;
589 $model = $sbmlDoc->createModel();
1038 return $sbmlDoc;
1240 return $sbmlDoc;
1260 $sbmlDoc = shift();
1261 if ($sbmlDoc == undef) {
1292 $sbmlDoc->printErrors();
1314 $sbmlDoc->printErrors();
1362 $sbmlDoc = $_[0];
[all …]
/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/csharp/
H A DcreateExampleSBML.cs73 SBMLDocument sbmlDoc = null; in Main()
83 SBMLok = validateExampleSBML(sbmlDoc); in Main()
92 SBMLok = validateExampleSBML(sbmlDoc); in Main()
101 SBMLok = validateExampleSBML(sbmlDoc); in Main()
153 Model model = sbmlDoc.createModel(); in createExampleEnzymaticReaction()
617 return sbmlDoc; in createExampleEnzymaticReaction()
654 Model model = sbmlDoc.createModel(); in createExampleInvolvingUnits()
1120 return sbmlDoc; in createExampleInvolvingUnits()
1152 Model model = sbmlDoc.createModel(); in createExampleInvolvingFunctionDefinitions()
1336 return sbmlDoc; in createExampleInvolvingFunctionDefinitions()
[all …]
H A DvalidateSBML.cs114 SBMLDocument sbmlDoc; in validate()
119 sbmlDoc = libsbml.readSBML(inputFile); in validate()
123 long errors = sbmlDoc.getNumErrors(); in validate()
135 long severity = sbmlDoc.getError(i).getSeverity(); in validate()
146 errMsgRead = sbmlDoc.getErrorLog().toString(); in validate()
170 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, enableUnitCCheck); in validate()
172 failures = sbmlDoc.checkConsistency(); in validate()
181 long severity = sbmlDoc.getError(i).getSeverity(); in validate()
197 errMsgCC = sbmlDoc.getErrorLog().toString(); in validate()
H A DpromoteParameters.cs69 SBMLDocument sbmlDoc = reader.readSBML(inputFile); in Main()
71 if ( sbmlDoc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0) in Main()
73 sbmlDoc.printErrors(); in Main()
85 if (sbmlDoc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS) in Main()
91 writer.writeSBML(sbmlDoc, outputFile); in Main()
/dports/biology/libsbml/libsbml-5.19.0/examples/csharp/
H A DcreateExampleSBML.cs73 SBMLDocument sbmlDoc = null; in Main()
83 SBMLok = validateExampleSBML(sbmlDoc); in Main()
92 SBMLok = validateExampleSBML(sbmlDoc); in Main()
101 SBMLok = validateExampleSBML(sbmlDoc); in Main()
153 Model model = sbmlDoc.createModel(); in createExampleEnzymaticReaction()
617 return sbmlDoc; in createExampleEnzymaticReaction()
654 Model model = sbmlDoc.createModel(); in createExampleInvolvingUnits()
1120 return sbmlDoc; in createExampleInvolvingUnits()
1152 Model model = sbmlDoc.createModel(); in createExampleInvolvingFunctionDefinitions()
1336 return sbmlDoc; in createExampleInvolvingFunctionDefinitions()
[all …]
H A DvalidateSBML.cs114 SBMLDocument sbmlDoc; in validate()
119 sbmlDoc = libsbml.readSBML(inputFile); in validate()
123 long errors = sbmlDoc.getNumErrors(); in validate()
135 long severity = sbmlDoc.getError(i).getSeverity(); in validate()
146 errMsgRead = sbmlDoc.getErrorLog().toString(); in validate()
170 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, enableUnitCCheck); in validate()
172 failures = sbmlDoc.checkConsistency(); in validate()
181 long severity = sbmlDoc.getError(i).getSeverity(); in validate()
197 errMsgCC = sbmlDoc.getErrorLog().toString(); in validate()
H A DpromoteParameters.cs69 SBMLDocument sbmlDoc = reader.readSBML(inputFile); in Main()
71 if ( sbmlDoc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0) in Main()
73 sbmlDoc.printErrors(); in Main()
85 if (sbmlDoc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS) in Main()
91 writer.writeSBML(sbmlDoc, outputFile); in Main()
H A DstripPackage.cs70 SBMLDocument sbmlDoc = reader.readSBML(inputFile); in Main()
72 if ( sbmlDoc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0) in Main()
74 sbmlDoc.printErrors(); in Main()
89 if (sbmlDoc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS) in Main()
95 writer.writeSBML(sbmlDoc, outputFile); in Main()
/dports/biology/libsbml/libsbml-5.19.0/examples/java/
H A DcreateExampleSBML.java91 SBMLDocument sbmlDoc = null; in main() local
100 SBMLok = validateExampleSBML(sbmlDoc); in main()
111 SBMLok = validateExampleSBML(sbmlDoc); in main()
122 SBMLok = validateExampleSBML(sbmlDoc); in main()
172 Model model = sbmlDoc.createModel(); in createExampleEnzymaticReaction()
645 return sbmlDoc; in createExampleEnzymaticReaction()
681 Model model = sbmlDoc.createModel(); in createExampleInvolvingUnits()
1146 return sbmlDoc; in createExampleInvolvingUnits()
1176 Model model = sbmlDoc.createModel(); in createExampleInvolvingFunctionDefinitions()
1353 return sbmlDoc; in createExampleInvolvingFunctionDefinitions()
[all …]
/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/java/
H A DcreateExampleSBML.java91 SBMLDocument sbmlDoc = null; in main() local
100 SBMLok = validateExampleSBML(sbmlDoc); in main()
111 SBMLok = validateExampleSBML(sbmlDoc); in main()
122 SBMLok = validateExampleSBML(sbmlDoc); in main()
172 Model model = sbmlDoc.createModel(); in createExampleEnzymaticReaction()
645 return sbmlDoc; in createExampleEnzymaticReaction()
681 Model model = sbmlDoc.createModel(); in createExampleInvolvingUnits()
1146 return sbmlDoc; in createExampleInvolvingUnits()
1176 Model model = sbmlDoc.createModel(); in createExampleInvolvingFunctionDefinitions()
1353 return sbmlDoc; in createExampleInvolvingFunctionDefinitions()
[all …]

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