/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/c/ |
H A D | createExampleSBML.c | 89 SBMLDocument_t* sbmlDoc = NULL; in main() local 99 SBMLDocument_free(sbmlDoc); in main() 109 SBMLDocument_free(sbmlDoc); in main() 119 SBMLDocument_free(sbmlDoc); in main() 152 SBMLDocument_t* sbmlDoc; in createExampleEnzymaticReaction() local 655 return sbmlDoc; in createExampleEnzymaticReaction() 674 SBMLDocument_t* sbmlDoc; in createExampleInvolvingUnits() local 1183 return sbmlDoc; in createExampleInvolvingUnits() 1203 SBMLDocument_t* sbmlDoc; in createExampleInvolvingFunctionDefinitions() local 1416 return sbmlDoc; in createExampleInvolvingFunctionDefinitions() [all …]
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/dports/biology/libsbml/libsbml-5.19.0/examples/c/ |
H A D | createExampleSBML.c | 89 SBMLDocument_t* sbmlDoc = NULL; in main() local 99 SBMLDocument_free(sbmlDoc); in main() 109 SBMLDocument_free(sbmlDoc); in main() 119 SBMLDocument_free(sbmlDoc); in main() 152 SBMLDocument_t* sbmlDoc; in createExampleEnzymaticReaction() local 655 return sbmlDoc; in createExampleEnzymaticReaction() 674 SBMLDocument_t* sbmlDoc; in createExampleInvolvingUnits() local 1183 return sbmlDoc; in createExampleInvolvingUnits() 1203 SBMLDocument_t* sbmlDoc; in createExampleInvolvingFunctionDefinitions() local 1416 return sbmlDoc; in createExampleInvolvingFunctionDefinitions() [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/ruby/ |
H A D | createExampleSBML.rb | 96 model = sbmlDoc.createModel 546 return sbmlDoc; 579 model = sbmlDoc.createModel 1032 return sbmlDoc; 1061 model = sbmlDoc.createModel 1238 return sbmlDoc; 1257 def validateExampleSBML(sbmlDoc) argument 1258 if (sbmlDoc == nil) 1288 sbmlDoc.printErrors 1308 sbmlDoc.printErrors [all …]
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/dports/biology/libsbml/libsbml-5.19.0/examples/ruby/ |
H A D | createExampleSBML.rb | 96 model = sbmlDoc.createModel 546 return sbmlDoc; 579 model = sbmlDoc.createModel 1032 return sbmlDoc; 1061 model = sbmlDoc.createModel 1238 return sbmlDoc; 1257 def validateExampleSBML(sbmlDoc) argument 1258 if (sbmlDoc == nil) 1288 sbmlDoc.printErrors 1308 sbmlDoc.printErrors [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/c++/ |
H A D | createExampleSBML.cpp | 92 SBMLDocument* sbmlDoc = 0; in main() local 104 delete sbmlDoc; in main() 114 delete sbmlDoc; in main() 124 delete sbmlDoc; in main() 179 Model* model = sbmlDoc->createModel(); in createExampleEnzymaticReaction() 650 return sbmlDoc; in createExampleEnzymaticReaction() 1154 return sbmlDoc; in createExampleInvolvingUnits() 1373 return sbmlDoc; in createExampleInvolvingFunctionDefinitions() 1395 if (!sbmlDoc) in validateExampleSBML() 1432 sbmlDoc->printErrors(oss); in validateExampleSBML() [all …]
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/dports/biology/libsbml/libsbml-5.19.0/examples/c++/ |
H A D | createExampleSBML.cpp | 92 SBMLDocument* sbmlDoc = 0; in main() local 104 delete sbmlDoc; in main() 114 delete sbmlDoc; in main() 124 delete sbmlDoc; in main() 179 Model* model = sbmlDoc->createModel(); in createExampleEnzymaticReaction() 650 return sbmlDoc; in createExampleEnzymaticReaction() 1154 return sbmlDoc; in createExampleInvolvingUnits() 1373 return sbmlDoc; in createExampleInvolvingFunctionDefinitions() 1395 if (!sbmlDoc) in validateExampleSBML() 1432 sbmlDoc->printErrors(oss); in validateExampleSBML() [all …]
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/dports/biology/libsbml/libsbml-5.19.0/examples/r/ |
H A D | createExampleSBML.R | 89 sbmlDoc = SBMLDocument(level,version); functionVar 97 model = SBMLDocument_createModel(sbmlDoc); 549 return(sbmlDoc); 571 sbmlDoc = SBMLDocument(level,version); functionVar 1034 return (sbmlDoc); 1055 sbmlDoc = SBMLDocument(level,version); functionVar 1240 return (sbmlDoc); 1287 SBMLDocument_printErrors(sbmlDoc); 1373 SBMLok = validateExampleSBML(sbmlDoc); 1385 SBMLok = validateExampleSBML(sbmlDoc); [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/r/ |
H A D | createExampleSBML.R | 89 sbmlDoc = SBMLDocument(level,version); functionVar 97 model = SBMLDocument_createModel(sbmlDoc); 549 return(sbmlDoc); 571 sbmlDoc = SBMLDocument(level,version); functionVar 1034 return (sbmlDoc); 1055 sbmlDoc = SBMLDocument(level,version); functionVar 1240 return (sbmlDoc); 1287 SBMLDocument_printErrors(sbmlDoc); 1373 SBMLok = validateExampleSBML(sbmlDoc); 1385 SBMLok = validateExampleSBML(sbmlDoc); [all …]
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/dports/biology/libsbml/libsbml-5.19.0/examples/python/ |
H A D | createExampleSBML.py | 98 model = sbmlDoc.createModel() 538 return sbmlDoc 572 model = sbmlDoc.createModel() 1016 return sbmlDoc 1044 model = sbmlDoc.createModel() 1215 return sbmlDoc 1235 def validateExampleSBML(sbmlDoc): argument 1236 if sbmlDoc is None: 1263 sbmlDoc.printErrors() 1281 sbmlDoc.printErrors() [all …]
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H A D | validateSBML.py | 61 sbmlDoc = libsbml.readSBML(file) 64 errors = sbmlDoc.getNumErrors() 75 severity = sbmlDoc.getError(i).getSeverity() 82 errMsgRead = sbmlDoc.getErrorLog().toString() 99 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, self.ucheck) 101 failures = sbmlDoc.checkConsistency() 110 severity = sbmlDoc.getError(i).getSeverity() 120 errMsgCC = sbmlDoc.getErrorLog().toString()
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H A D | validateSBMLWithCallback.py | 87 sbmlDoc = libsbml.readSBML(file) 90 errors = sbmlDoc.getNumErrors() 101 severity = sbmlDoc.getError(i).getSeverity() 108 errMsgRead = sbmlDoc.getErrorLog().toString() 125 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, self.ucheck) 127 failures = sbmlDoc.checkConsistency() 136 severity = sbmlDoc.getError(i).getSeverity() 146 errMsgCC = sbmlDoc.getErrorLog().toString()
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/python/ |
H A D | createExampleSBML.py | 98 model = sbmlDoc.createModel() 538 return sbmlDoc 572 model = sbmlDoc.createModel() 1016 return sbmlDoc 1044 model = sbmlDoc.createModel() 1215 return sbmlDoc 1235 def validateExampleSBML(sbmlDoc): argument 1236 if sbmlDoc is None: 1263 sbmlDoc.printErrors() 1281 sbmlDoc.printErrors() [all …]
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H A D | validateSBML.py | 61 sbmlDoc = libsbml.readSBML(file) 64 errors = sbmlDoc.getNumErrors() 75 severity = sbmlDoc.getError(i).getSeverity() 82 errMsgRead = sbmlDoc.getErrorLog().toString() 99 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, self.ucheck) 101 failures = sbmlDoc.checkConsistency() 110 severity = sbmlDoc.getError(i).getSeverity() 120 errMsgCC = sbmlDoc.getErrorLog().toString()
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H A D | validateSBMLWithCallback.py | 87 sbmlDoc = libsbml.readSBML(file) 90 errors = sbmlDoc.getNumErrors() 101 severity = sbmlDoc.getError(i).getSeverity() 108 errMsgRead = sbmlDoc.getErrorLog().toString() 125 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, self.ucheck) 127 failures = sbmlDoc.checkConsistency() 136 severity = sbmlDoc.getError(i).getSeverity() 146 errMsgCC = sbmlDoc.getErrorLog().toString()
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/perl/ |
H A D | createExampleSBML.pl | 107 $model = $sbmlDoc->createModel(); 555 return $sbmlDoc; 589 $model = $sbmlDoc->createModel(); 1038 return $sbmlDoc; 1240 return $sbmlDoc; 1260 $sbmlDoc = shift(); 1261 if ($sbmlDoc == undef) { 1292 $sbmlDoc->printErrors(); 1314 $sbmlDoc->printErrors(); 1362 $sbmlDoc = $_[0]; [all …]
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/dports/biology/libsbml/libsbml-5.19.0/examples/perl/ |
H A D | createExampleSBML.pl | 107 $model = $sbmlDoc->createModel(); 555 return $sbmlDoc; 589 $model = $sbmlDoc->createModel(); 1038 return $sbmlDoc; 1240 return $sbmlDoc; 1260 $sbmlDoc = shift(); 1261 if ($sbmlDoc == undef) { 1292 $sbmlDoc->printErrors(); 1314 $sbmlDoc->printErrors(); 1362 $sbmlDoc = $_[0]; [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/csharp/ |
H A D | createExampleSBML.cs | 73 SBMLDocument sbmlDoc = null; in Main() 83 SBMLok = validateExampleSBML(sbmlDoc); in Main() 92 SBMLok = validateExampleSBML(sbmlDoc); in Main() 101 SBMLok = validateExampleSBML(sbmlDoc); in Main() 153 Model model = sbmlDoc.createModel(); in createExampleEnzymaticReaction() 617 return sbmlDoc; in createExampleEnzymaticReaction() 654 Model model = sbmlDoc.createModel(); in createExampleInvolvingUnits() 1120 return sbmlDoc; in createExampleInvolvingUnits() 1152 Model model = sbmlDoc.createModel(); in createExampleInvolvingFunctionDefinitions() 1336 return sbmlDoc; in createExampleInvolvingFunctionDefinitions() [all …]
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H A D | validateSBML.cs | 114 SBMLDocument sbmlDoc; in validate() 119 sbmlDoc = libsbml.readSBML(inputFile); in validate() 123 long errors = sbmlDoc.getNumErrors(); in validate() 135 long severity = sbmlDoc.getError(i).getSeverity(); in validate() 146 errMsgRead = sbmlDoc.getErrorLog().toString(); in validate() 170 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, enableUnitCCheck); in validate() 172 failures = sbmlDoc.checkConsistency(); in validate() 181 long severity = sbmlDoc.getError(i).getSeverity(); in validate() 197 errMsgCC = sbmlDoc.getErrorLog().toString(); in validate()
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H A D | promoteParameters.cs | 69 SBMLDocument sbmlDoc = reader.readSBML(inputFile); in Main() 71 if ( sbmlDoc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0) in Main() 73 sbmlDoc.printErrors(); in Main() 85 if (sbmlDoc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS) in Main() 91 writer.writeSBML(sbmlDoc, outputFile); in Main()
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/dports/biology/libsbml/libsbml-5.19.0/examples/csharp/ |
H A D | createExampleSBML.cs | 73 SBMLDocument sbmlDoc = null; in Main() 83 SBMLok = validateExampleSBML(sbmlDoc); in Main() 92 SBMLok = validateExampleSBML(sbmlDoc); in Main() 101 SBMLok = validateExampleSBML(sbmlDoc); in Main() 153 Model model = sbmlDoc.createModel(); in createExampleEnzymaticReaction() 617 return sbmlDoc; in createExampleEnzymaticReaction() 654 Model model = sbmlDoc.createModel(); in createExampleInvolvingUnits() 1120 return sbmlDoc; in createExampleInvolvingUnits() 1152 Model model = sbmlDoc.createModel(); in createExampleInvolvingFunctionDefinitions() 1336 return sbmlDoc; in createExampleInvolvingFunctionDefinitions() [all …]
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H A D | validateSBML.cs | 114 SBMLDocument sbmlDoc; in validate() 119 sbmlDoc = libsbml.readSBML(inputFile); in validate() 123 long errors = sbmlDoc.getNumErrors(); in validate() 135 long severity = sbmlDoc.getError(i).getSeverity(); in validate() 146 errMsgRead = sbmlDoc.getErrorLog().toString(); in validate() 170 sbmlDoc.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY, enableUnitCCheck); in validate() 172 failures = sbmlDoc.checkConsistency(); in validate() 181 long severity = sbmlDoc.getError(i).getSeverity(); in validate() 197 errMsgCC = sbmlDoc.getErrorLog().toString(); in validate()
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H A D | promoteParameters.cs | 69 SBMLDocument sbmlDoc = reader.readSBML(inputFile); in Main() 71 if ( sbmlDoc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0) in Main() 73 sbmlDoc.printErrors(); in Main() 85 if (sbmlDoc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS) in Main() 91 writer.writeSBML(sbmlDoc, outputFile); in Main()
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H A D | stripPackage.cs | 70 SBMLDocument sbmlDoc = reader.readSBML(inputFile); in Main() 72 if ( sbmlDoc.getErrorLog().getNumFailsWithSeverity(libsbml.LIBSBML_SEV_ERROR) > 0) in Main() 74 sbmlDoc.printErrors(); in Main() 89 if (sbmlDoc.convert(props) != libsbml.LIBSBML_OPERATION_SUCCESS) in Main() 95 writer.writeSBML(sbmlDoc, outputFile); in Main()
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/dports/biology/libsbml/libsbml-5.19.0/examples/java/ |
H A D | createExampleSBML.java | 91 SBMLDocument sbmlDoc = null; in main() local 100 SBMLok = validateExampleSBML(sbmlDoc); in main() 111 SBMLok = validateExampleSBML(sbmlDoc); in main() 122 SBMLok = validateExampleSBML(sbmlDoc); in main() 172 Model model = sbmlDoc.createModel(); in createExampleEnzymaticReaction() 645 return sbmlDoc; in createExampleEnzymaticReaction() 681 Model model = sbmlDoc.createModel(); in createExampleInvolvingUnits() 1146 return sbmlDoc; in createExampleInvolvingUnits() 1176 Model model = sbmlDoc.createModel(); in createExampleInvolvingFunctionDefinitions() 1353 return sbmlDoc; in createExampleInvolvingFunctionDefinitions() [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/java/ |
H A D | createExampleSBML.java | 91 SBMLDocument sbmlDoc = null; in main() local 100 SBMLok = validateExampleSBML(sbmlDoc); in main() 111 SBMLok = validateExampleSBML(sbmlDoc); in main() 122 SBMLok = validateExampleSBML(sbmlDoc); in main() 172 Model model = sbmlDoc.createModel(); in createExampleEnzymaticReaction() 645 return sbmlDoc; in createExampleEnzymaticReaction() 681 Model model = sbmlDoc.createModel(); in createExampleInvolvingUnits() 1146 return sbmlDoc; in createExampleInvolvingUnits() 1176 Model model = sbmlDoc.createModel(); in createExampleInvolvingFunctionDefinitions() 1353 return sbmlDoc; in createExampleInvolvingFunctionDefinitions() [all …]
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