| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/ |
| H A D | glbalignle.cpp | 203 SCORE scoreSum = 0; in GlobalAlignLE() local
213 scoreSum += fcLetter*ScoreMxB[uLetter][0]; in GlobalAlignLE()
215 if (0 == scoreSum) in GlobalAlignLE()
220 MPrev[0] = (logf(scoreSum) - g_scoreCenter)*OccA[0]*OccB[0]; in GlobalAlignLE()
222 MPrev[0] = (logf(scoreSum) - g_scoreCenter); in GlobalAlignLE()
236 SCORE scoreSum = 0; in GlobalAlignLE() local
246 scoreSum += fcLetter*ScoreMxB[uLetter][j]; in GlobalAlignLE()
248 if (0 == scoreSum) in GlobalAlignLE()
253 MPrev[j] = (logf(scoreSum) - g_scoreCenter)*OccA[0]*OccB[j] + in GlobalAlignLE()
256 MPrev[j] = (logf(scoreSum) - g_scoreCenter) + in GlobalAlignLE()
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| H A D | glbalignsp.cpp | 174 SCORE scoreSum = 0; in GlobalAlignSP() local
184 scoreSum += fcLetter*ScoreMxB[uLetter][0]; in GlobalAlignSP()
186 MPrev[0] = scoreSum - g_scoreCenter; in GlobalAlignSP()
198 SCORE scoreSum = 0; in GlobalAlignSP() local
208 scoreSum += fcLetter*ScoreMxB[uLetter][j]; in GlobalAlignSP()
210 MPrev[j] = scoreSum - g_scoreCenter + GapOpenB[0] + GapCloseB[j-1]; in GlobalAlignSP()
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| H A D | glbalignspn.cpp | 214 SCORE scoreSum = 0; in GlobalAlignSPN() local
224 scoreSum += fcLetter*ScoreMxB[uLetter][0]; in GlobalAlignSPN()
226 MPrev[0] = scoreSum - g_scoreCenter; in GlobalAlignSPN()
238 SCORE scoreSum = 0; in GlobalAlignSPN() local
248 scoreSum += fcLetter*ScoreMxB[uLetter][j]; in GlobalAlignSPN()
250 MPrev[j] = scoreSum - g_scoreCenter + GapOpenB[0] + GapCloseB[j-1]; in GlobalAlignSPN()
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| H A D | profilefrommsa.cpp | 297 SCORE scoreSum = 0; in ProfileFromMSA() local
299 scoreSum += PP.m_fcCounts[j]*(*g_ptrScoreMatrix)[i][j]; in ProfileFromMSA()
300 PP.m_AAScores[i] = scoreSum; in ProfileFromMSA()
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| H A D | aligngivenpath.cpp | 135 SCORE scoreSum = 0; in ScoresFromFreqsPos() local
137 scoreSum += PP.m_fcCounts[j]*(*g_ptrScoreMatrix)[i][j]; in ScoresFromFreqsPos()
138 PP.m_AAScores[i] = scoreSum; in ScoresFromFreqsPos()
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| /dports/biology/muscle/muscle-3.8.1551/ |
| H A D | glbalignle.cpp | 190 SCORE scoreSum = 0; in GlobalAlignLE() local
200 scoreSum += fcLetter*ScoreMxB[uLetter][0]; in GlobalAlignLE()
202 if (0 == scoreSum) in GlobalAlignLE()
207 MPrev[0] = (logf(scoreSum) - g_scoreCenter)*OccA[0]*OccB[0]; in GlobalAlignLE()
209 MPrev[0] = (logf(scoreSum) - g_scoreCenter); in GlobalAlignLE()
223 SCORE scoreSum = 0; in GlobalAlignLE() local
233 scoreSum += fcLetter*ScoreMxB[uLetter][j]; in GlobalAlignLE()
235 if (0 == scoreSum) in GlobalAlignLE()
240 MPrev[j] = (logf(scoreSum) - g_scoreCenter)*OccA[0]*OccB[j] + in GlobalAlignLE()
243 MPrev[j] = (logf(scoreSum) - g_scoreCenter) + in GlobalAlignLE()
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| H A D | glbalignsp.cpp | 161 SCORE scoreSum = 0; in GlobalAlignSP() local
171 scoreSum += fcLetter*ScoreMxB[uLetter][0]; in GlobalAlignSP()
173 MPrev[0] = scoreSum - g_scoreCenter; in GlobalAlignSP()
185 SCORE scoreSum = 0; in GlobalAlignSP() local
195 scoreSum += fcLetter*ScoreMxB[uLetter][j]; in GlobalAlignSP()
197 MPrev[j] = scoreSum - g_scoreCenter + GapOpenB[0] + GapCloseB[j-1]; in GlobalAlignSP()
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| H A D | glbalignspn.cpp | 196 SCORE scoreSum = 0; in GlobalAlignSPN() local
206 scoreSum += fcLetter*ScoreMxB[uLetter][0]; in GlobalAlignSPN()
208 MPrev[0] = scoreSum - g_scoreCenter; in GlobalAlignSPN()
220 SCORE scoreSum = 0; in GlobalAlignSPN() local
230 scoreSum += fcLetter*ScoreMxB[uLetter][j]; in GlobalAlignSPN()
232 MPrev[j] = scoreSum - g_scoreCenter + GapOpenB[0] + GapCloseB[j-1]; in GlobalAlignSPN()
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| H A D | profilefrommsa.cpp | 275 SCORE scoreSum = 0; in ProfileFromMSA() local
277 scoreSum += PP.m_fcCounts[j]*(*g_ptrScoreMatrix)[i][j]; in ProfileFromMSA()
278 PP.m_AAScores[i] = scoreSum; in ProfileFromMSA()
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| H A D | aligngivenpath.cpp | 123 SCORE scoreSum = 0; in ScoresFromFreqsPos() local
125 scoreSum += PP.m_fcCounts[j]*(*g_ptrScoreMatrix)[i][j]; in ScoresFromFreqsPos()
126 PP.m_AAScores[i] = scoreSum; in ScoresFromFreqsPos()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/bma_refine/ |
| H A D | RefinerEngine.cpp | 322 TScoreType scoreSum = 0; in IsConverged() local
325 for (; cit != m_perTrialResults.end(); ++cit) scoreSum += cit->first; in IsConverged()
326 avgScore = scoreSum / (TScoreType) nTrialsRun; in IsConverged()
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| /dports/biology/bbmap/bbmap/current/consensus/ |
| H A D | ConsensusMaker.java | 367 if(scoreSum>0){ in process()
368 outstream.println(Tools.number("Avg Score:", 100*scoreSum/alignedReads, 3, 8)); in process()
584 scoreSum+=pt.scoreSumT;
814 protected double scoreSum=0; local
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| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | AssemblyStats2.java | 886 double scoreSum=0; in calcAssemblyScore() local
899 scoreSum+=count*(i*Tools.min(max, i))*mult; in calcAssemblyScore()
903 scoreSum+=(t.length*Tools.min(max, t.length))*mult; in calcAssemblyScore()
906 return scoreSum+aligned*50; in calcAssemblyScore()
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| /dports/audio/amarok/amarok-3e11ccdd1417e70486eaaa84d8475182eec44c20/src/dialogs/ |
| H A D | TagDialog.cpp | 999 double scoreSum = map.value( Meta::Field::SCORE ).toDouble(); in getTagsFromMultipleTracks() local
1067 scoreSum += tags.value( Meta::Field::SCORE ).toDouble(); in getTagsFromMultipleTracks()
1102 map.insert( Meta::Field::SCORE, scoreSum / scoreCount ); in getTagsFromMultipleTracks()
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| /dports/math/clasp/clasp-3.3.5/src/ |
| H A D | solver.cpp | 1616 uint64 scoreSum = 0; in reduceLinear() local
1618 scoreSum += sc.score(learnts_[i]->activity()); in reduceLinear()
1620 double avgAct = (scoreSum / (double) numLearntConstraints()); in reduceLinear()
1625 scoreThresh = (scoreMax + (scoreSum / (double) numLearntConstraints())) / 2.0; in reduceLinear()
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| /dports/math/clingo/clingo-5.5.1/clasp/clasp-da10954/src/ |
| H A D | solver.cpp | 1624 uint64 scoreSum = 0; in reduceLinear() local
1626 scoreSum += sc.score(learnts_[i]->activity()); in reduceLinear()
1628 double avgAct = (scoreSum / (double) numLearntConstraints()); in reduceLinear()
1633 scoreThresh = (scoreMax + (scoreSum / (double) numLearntConstraints())) / 2.0; in reduceLinear()
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| /dports/math/clingo/clingo-5.5.1/clasp/src/ |
| H A D | solver.cpp | 1624 uint64 scoreSum = 0; in reduceLinear() local
1626 scoreSum += sc.score(learnts_[i]->activity()); in reduceLinear()
1628 double avgAct = (scoreSum / (double) numLearntConstraints()); in reduceLinear()
1633 scoreThresh = (scoreMax + (scoreSum / (double) numLearntConstraints())) / 2.0; in reduceLinear()
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| /dports/devel/raknet/raknet-3.9.2_10,1/DependentExtensions/Lobby2/PGSQL/ |
| H A D | Lobby2Message_PGSQL.cpp | 2682 PostgreSQLInterface::PQGetValueFromBinary(&scoreSum, result, 0, "sum"); in ServerDBImpl()
2684 scoreSum=0.0f; in ServerDBImpl()
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| /dports/devel/raknet/raknet-3.9.2_10,1/DependentExtensions/Lobby2/ |
| H A D | Lobby2Message.cpp | 1268 bitStream->Serialize(writeToBitstream,scoreSum); in Serialize()
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| H A D | Lobby2Message.h | 1906 float scoreSum; member
|