/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/prosplign/ |
H A D | intron.hpp | 264 if(j - scoring.lmin - 3 >= scoring.ini_nuc_margin) { in NucStep() 343 gtcost = scoring.sm_ICGT + scoring.lmin*scoring.ie; in CBestIntron() 344 gccost = scoring.sm_ICGC + scoring.lmin*scoring.ie; in CBestIntron() 345 atcost = scoring.sm_ICAT + scoring.lmin*scoring.ie; in CBestIntron() 346 anycost = scoring.sm_ICANY + scoring.lmin*scoring.ie; in CBestIntron() 668 m_bei.w1 = BestSc1(m_any, j, scoring) - scoring.sm_ICANY; in Step() 685 BestScCon(m_at, scoring.sm_ICAT, j, scoring); in Step() 721 …if(sc == sc_any.first - scoring.sm_ICANY - scoring.ie_x_lmin) return j - sc_any.second + scoring.l… in Getlen() 724 … _ASSERT(sc == sc_at.first - scoring.sm_ICAT - scoring.ie*(j - sc_at.second + scoring.lmin)); in Getlen() 728 …if(sc == sc_gt.first - scoring.sm_ICGT - scoring.ie*(j - sc_gt.second + scoring.lmin)) return j - … in Getlen() [all …]
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H A D | intron.cpp | 49 swa.first -= scoring.ie; in BEGIN_SCOPE() 50 swt.first -= scoring.ie; in BEGIN_SCOPE() 51 swg.first -= scoring.ie; in BEGIN_SCOPE() 112 …int sco = esc[j-scoring.lmin-3] + matrix.MultScore(nseq[j-scoring.lmin-3], nseq[j-scoring.lmin-2],… in AddW2() 117 …sco = esc[j-scoring.lmin-3] + matrix.MultScore(nseq[j-scoring.lmin-3], nseq[j-scoring.lmin-2], nT,… in AddW2() 122 …sco = esc[j-scoring.lmin-3] + matrix.MultScore(nseq[j-scoring.lmin-3], nseq[j-scoring.lmin-2], nG,… in AddW2() 127 …sco = esc[j-scoring.lmin-3] + matrix.MultScore(nseq[j-scoring.lmin-3], nseq[j-scoring.lmin-2], nC,… in AddW2() 132 …sco = esc[j-scoring.lmin-3] + matrix.MultScore(nseq[j-scoring.lmin-3], nseq[j-scoring.lmin-2], nN,… in AddW2() 143 if(j - scoring.lmin - 3 >= scoring.ini_nuc_margin) { in NucStep() 144 AddW1(scoring); in NucStep() [all …]
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H A D | AlignInfo.cpp | 91 CAlignRow(length, scoring), m_length(length) in CFindGapIntronRow() 133 m_w.resize(length + scoring.lmin + 4, infinity); in CAlignRow() 134 w = &m_w[0] + scoring.lmin + 4; in CAlignRow() 135 m_v.resize(length + scoring.lmin + 1, infinity); in CAlignRow() 136 v = &m_v[0] + scoring.lmin + 1; in CAlignRow() 137 m_h1.resize(length + scoring.lmin + 1, infinity); in CAlignRow() 138 h1 = &m_h1[0] + scoring.lmin + 1; in CAlignRow() 139 m_h2.resize(length + scoring.lmin + 1, infinity); in CAlignRow() 140 h2 = &m_h2[0] + scoring.lmin + 1; in CAlignRow() 141 m_h3.resize(length + scoring.lmin + 1, infinity); in CAlignRow() [all …]
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/dports/security/py-zxcvbn/zxcvbn-python-4.4.28/tests/ |
H A D | scoring_test.py | 3 from zxcvbn import scoring 28 assert scoring.nCk(n, k) == scoring.nCk(n, n - k), "mirror identity" 30 scoring.nCk(n - 1, k - 1) + scoring.nCk(n - 1, k) 227 assert scoring.regex_guesses(match) == scoring.MIN_YEAR_SPACE, msg 384 ['aBcDef', scoring.nCk(6, 1) + scoring.nCk(6, 2)], 386 ['aBCDEf', scoring.nCk(6, 1) + scoring.nCk(6, 2)], 387 ['ABCdef', scoring.nCk(6, 1) + scoring.nCk(6, 2) + scoring.nCk(6, 3)], 408 ['a4a4aa', scoring.nCk(6, 2) + scoring.nCk(6, 1), {'4': 'a'}], 409 ['4a4a44', scoring.nCk(6, 2) + scoring.nCk(6, 1), {'4': 'a'}], 410 ['a44att+', (scoring.nCk(4, 2) + scoring.nCk(4, 1)) * [all …]
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/dports/games/gnugo/gnugo-3.8/regression/ |
H A D | newscore.tst | 1 loadsgf games/scoring/score1.sgf 5 loadsgf games/scoring/score2.sgf 9 loadsgf games/scoring/score3.sgf 13 loadsgf games/scoring/score4.sgf 17 loadsgf games/scoring/score5.sgf 21 loadsgf games/scoring/score6.sgf 25 loadsgf games/scoring/score7.sgf 29 loadsgf games/scoring/score8.sgf 33 loadsgf games/scoring/score9.sgf 37 loadsgf games/scoring/score10.sgf [all …]
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H A D | score.tst | 2 #loadsgf games/scoring/score1.sgf 6 loadsgf games/scoring/score2.sgf 10 loadsgf games/scoring/score3.sgf 14 loadsgf games/scoring/score4.sgf 18 loadsgf games/scoring/score5.sgf 22 loadsgf games/scoring/score6.sgf 26 loadsgf games/scoring/score7.sgf 30 loadsgf games/scoring/score8.sgf 34 loadsgf games/scoring/score9.sgf 38 loadsgf games/scoring/score10.sgf [all …]
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H A D | score2.tst | 1 loadsgf games/scoring/score31.sgf 5 loadsgf games/scoring/score32.sgf 9 loadsgf games/scoring/score33.sgf 13 loadsgf games/scoring/score34.sgf 17 loadsgf games/scoring/score35.sgf 21 loadsgf games/scoring/score36.sgf 25 loadsgf games/scoring/score37.sgf 35 loadsgf games/scoring/score39.sgf 39 loadsgf games/scoring/score40.sgf 43 loadsgf games/scoring/score41.sgf [all …]
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/dports/science/py-scikit-learn/scikit-learn-1.0.2/examples/ensemble/ |
H A D | plot_gradient_boosting_categorical.py | 167 scoring = "neg_mean_absolute_percentage_error" variable 170 dropped_result = cross_validate(hist_dropped, X, y, cv=n_cv_folds, scoring=scoring) 171 one_hot_result = cross_validate(hist_one_hot, X, y, cv=n_cv_folds, scoring=scoring) 172 ordinal_result = cross_validate(hist_ordinal, X, y, cv=n_cv_folds, scoring=scoring) 173 native_result = cross_validate(hist_native, X, y, cv=n_cv_folds, scoring=scoring) 258 dropped_result = cross_validate(hist_dropped, X, y, cv=n_cv_folds, scoring=scoring) 259 one_hot_result = cross_validate(hist_one_hot, X, y, cv=n_cv_folds, scoring=scoring) 260 ordinal_result = cross_validate(hist_ordinal, X, y, cv=n_cv_folds, scoring=scoring) 261 native_result = cross_validate(hist_native, X, y, cv=n_cv_folds, scoring=scoring)
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/zxcvbn-cpp/test/ |
H A D | test-scoring.coffee | 7 scoring = require (ROOT + '/scoring') 10 log2 = scoring.log2 11 log10 = scoring.log10 12 nCk = scoring.nCk 143 t.equal scoring.estimate_guesses(match, '1977'), scoring.date_guesses(match), msg 203 t.equal scoring.regex_guesses(match), Math.abs(scoring.REFERENCE_YEAR - 1972), msg 210 t.equal scoring.regex_guesses(match), scoring.MIN_YEAR_SPACE, msg 233 t.equal scoring.date_guesses(match), 365 * scoring.MIN_YEAR_SPACE * 4, msg 293 t.equal scoring.dictionary_guesses(match), 32 * scoring.uppercase_variations(match), msg 308 t.equal scoring.dictionary_guesses(match), 32 * scoring.l33t_variations(match), msg [all …]
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/dports/games/xmris/xmris.4.04/ |
H A D | scoring.c | 62 {scoring.high, scoring.today, scoring.personal}; 313 scoring.mine.score = score; 317 scoring.mine.marker = 0; 410 scoring.mine.score = 0; 1141 if(insert_score(scoring.today, &scoring.mine, !score_file)) 1143 inserted = scoring.today; 1147 insert_score(scoring.high, &scoring.mine, !score_file)) 1149 inserted = scoring.high; 1153 scoring.display = inserted; 1299 scoring.high[0].score = 0; [all …]
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/dports/science/py-scikit-learn/scikit-learn-1.0.2/sklearn/metrics/ |
H A D | _scorer.py | 387 def get_scorer(scoring): argument 402 if isinstance(scoring, str): 412 scorer = scoring 452 if isinstance(scoring, str): 453 return get_scorer(scoring) 454 elif callable(scoring): 471 elif scoring is None: 490 % scoring 531 keys = set(scoring) 555 scorer: check_scoring(estimator, scoring=scorer) for scorer in scoring [all …]
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/dports/x11/kf5-kactivities-stats/kactivities-stats-5.89.0/src/ |
H A D | cleaning.cpp | 20 KAMD_DBUS_DECL_INTERFACE(scoring, "Resources/Scoring", "ResourcesScoring"); in forgetResource() 23 scoring.call(QStringLiteral("DeleteStatsForResource"), activity, agent, resource); in forgetResource() 30 KAMD_DBUS_DECL_INTERFACE(scoring, "Resources/Scoring", "ResourcesScoring"); in forgetResources() 34 scoring.call(QStringLiteral("DeleteStatsForResource"), activity, agent, urlFilter); in forgetResources() 42 KAMD_DBUS_DECL_INTERFACE(scoring, "Resources/Scoring", "ResourcesScoring"); in forgetRecentStats() 45 scoring.call(QStringLiteral("DeleteRecentStats"), activity, count, in forgetRecentStats() 56 KAMD_DBUS_DECL_INTERFACE(scoring, "Resources/Scoring", "ResourcesScoring"); in forgetEarlierStats() 58 scoring.call(QStringLiteral("DeleteEarlierStats"), activity, months); in forgetEarlierStats()
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/dports/textproc/py-gensim/gensim-4.0.1/gensim/models/ |
H A D | phrases.py | 378 model.scoring = original_scorer 386 elif model.scoring == 'npmi': 536 if isinstance(scoring, str): 537 if scoring == 'default': 538 scoring = original_scorer 539 elif scoring == 'npmi': 540 scoring = npmi_scorer 547 if callable(scoring): 550 self.scoring = scoring 686 score = self.scoring( [all …]
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/dports/japanese/p5-Lingua-JA-Summarize-Extract/Lingua-JA-Summarize-Extract-0.02/lib/Lingua/JA/Summarize/Extract/Plugin/Scoring/ |
H A D | Base.pm | 6 sub scoring { subroutine 39 my($self, $scoring) = @_; 43 score => $scoring->{$_}, 45 } sort { $scoring->{$b} <=> $scoring->{$a} } keys %{ $scoring };
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/dports/security/helib/HElib-1.3.1/misc/psi/tests/ |
H A D | scoring.bats | 25 scoring="../../build/bin/scoring" 43 …$scoring ${data_prefix}/${prefix_bgv}.pk $data_prefix/db.ctxt $data_prefix/query.ctxt result.ctxt … 55 …$scoring ${data_prefix}/${prefix_bgv}.pk $data_prefix/db.ctxt $data_prefix/query.ctxt result.ctxt … 67 …$scoring ${data_prefix}/${prefix_bgv}.pk $data_prefix/db.ctxt $data_prefix/query.ctxt result.ctxt … 79 …$scoring ${data_prefix}/${prefix_bgv}.pk $data_prefix/db.ctxt $data_prefix/query.ctxt result.ctxt … 91 …$scoring ${data_prefix}/${prefix_bgv}.pk $data_prefix/db.ctxt $data_prefix/query.ctxt result.ctxt … 103 …$scoring ${data_prefix}/${prefix_bgv}.pk $data_prefix/db.ctxt $data_prefix/query.ctxt result.ctxt … 115 …$scoring ${data_prefix}/${prefix_bgv}.pk $data_prefix/db.ctxt $data_prefix/query.ctxt result.ctxt …
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/dports/math/R-cran-LearnBayes/LearnBayes/man/ |
H A D | strikeout.Rd | 7 number of strikeouts and at-bats when runners are in scoring position and when 8 runners are not in scoring position. 16 \item{r}{number of strikeouts of player when runners are not in scoring position} 17 \item{n}{number of at-bats of player when runners are not in scoring position} 18 \item{s}{number of strikeouts of player when runners are in scoring position} 19 \item{m}{number of at-bats of player when runners are in scoring position}
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/dports/www/ilias/ILIAS-5.4.25/Modules/Test/classes/ |
H A D | class.ilTestParticipant.php | 78 protected $scoring; variable in ilTestParticipant 307 return $this->scoring; 311 * @param ilTestParticipantScoring $scoring 313 public function setScoring(ilTestParticipantScoring $scoring) argument 315 $this->scoring = $scoring; 320 return $this->scoring instanceof ilTestParticipantScoring;
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H A D | class.ilTestParticipantList.php | 230 $scoring = new ilTestParticipantScoring(); 232 $scoring->setActiveId((int) $row['active_fi']); 233 $scoring->setScoredPass((int) $row['pass']); 235 $scoring->setAnsweredQuestions((int) $row['answeredquestions']); 236 $scoring->setTotalQuestions((int) $row['questioncount']); 238 $scoring->setReachedPoints((float) $row['reached_points']); 239 $scoring->setMaxPoints((float) $row['max_points']); 241 $scoring->setPassed((bool) $row['passed']); 242 $scoring->setFinalMark((string) $row['mark_official']); 244 $this->getParticipantByActiveId($row['active_fi'])->setScoring($scoring);
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/dports/textproc/py-whoosh/Whoosh-2.7.4/tests/ |
H A D | test_weightings.py | 6 from whoosh import fields, query, scoring 13 return [c for _, c in inspect.getmembers(scoring, inspect.isclass) 14 if scoring.Weighting in c.__bases__ and c not in ignore] 32 init_args = {"MultiWeighting": ([scoring.BM25F()], 33 {"text": scoring.Frequency()}), 34 "ReverseWeighting": ([scoring.BM25F()], {})} 58 from whoosh.scoring import Weighting
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/dports/www/ilias6/ILIAS-6.14/Modules/Test/classes/ |
H A D | class.ilTestParticipant.php | 78 protected $scoring; variable in ilTestParticipant 307 return $this->scoring; 311 * @param ilTestParticipantScoring $scoring 313 public function setScoring(ilTestParticipantScoring $scoring) argument 315 $this->scoring = $scoring; 320 return $this->scoring instanceof ilTestParticipantScoring;
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H A D | class.ilTestParticipantList.php | 230 $scoring = new ilTestParticipantScoring(); 232 $scoring->setActiveId((int) $row['active_fi']); 233 $scoring->setScoredPass((int) $row['pass']); 235 $scoring->setAnsweredQuestions((int) $row['answeredquestions']); 236 $scoring->setTotalQuestions((int) $row['questioncount']); 238 $scoring->setReachedPoints((float) $row['reached_points']); 239 $scoring->setMaxPoints((float) $row['max_points']); 241 $scoring->setPassed((bool) $row['passed']); 242 $scoring->setFinalMark((string) $row['mark_official']); 244 $this->getParticipantByActiveId($row['active_fi'])->setScoring($scoring);
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/dports/science/py-scikit-learn/scikit-learn-1.0.2/sklearn/inspection/ |
H A D | _permutation_importance.py | 108 scoring=None, 249 if callable(scoring): 250 scorer = scoring 251 elif scoring is None or isinstance(scoring, str): 252 scorer = check_scoring(estimator, scoring=scoring) 254 scorers_dict = _check_multimetric_scoring(estimator, scoring)
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/dports/biology/seqan1/seqan-1.3.1/seqan/chaining/ |
H A D | chain_base.h | 262 TScoring const & scoring, 322 TScoring const & scoring, 325 return globalChaining(source, dest, scoring, GenericChaining()); //default is GenericChaining 331 Score<TValue, Zero> const & scoring, 334 return globalChaining(source, dest, scoring, RangetreeChaining()); 340 Score<TValue, Manhattan> const & scoring, 343 return globalChaining(source, dest, scoring, RangetreeChaining()); 349 Score<TValue, ChainSoP> const & scoring, 352 return globalChaining(source, dest, scoring, RangetreeChaining()); 361 TScoring const & scoring) [all …]
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/markduplicates/ |
H A D | MarkDuplicatesScoringStrategy.java | 21 private final ToIntFunction<GATKRead> scoring; field in MarkDuplicatesScoringStrategy 23 MarkDuplicatesScoringStrategy(final ToIntFunction<GATKRead> scoring){ in MarkDuplicatesScoringStrategy() argument 24 this.scoring = scoring; in MarkDuplicatesScoringStrategy() 35 …return (short) (Math.min(scoring.applyAsInt(read), Short.MAX_VALUE / 2) + (read.failsVendorQuality… in score()
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/dports/devel/py-numba/numba-0.51.2/numba/tests/ |
H A D | test_target_overloadselector.py | 20 ordered, scoring = os._sort_signatures(compats) 22 self.assertEqual(len(scoring), 3) 24 self.assertEqual(scoring[types.Boolean, types.Boolean], 0) 25 self.assertEqual(scoring[types.Boolean, types.Any], 1) 26 self.assertEqual(scoring[types.Any, types.Boolean], 1) 36 ordered, scoring = os._sort_signatures(compats) 38 self.assertEqual(len(scoring), 4) 40 self.assertEqual(scoring[(types.List,)], 0) 41 self.assertEqual(scoring[(types.MutableSequence,)], 1) 42 self.assertEqual(scoring[(types.Sequence,)], 2) [all …]
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