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Searched refs:search_db (Results 1 – 25 of 47) sorted by relevance

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/dports/databases/percona-toolkit/percona-toolkit-3.3.0/lib/
H A DSchema.pm178 foreach my $search_db ( @search_dbs ) {
179 my @search_tbls = $tbl ? ($tbl) : keys %{$schema->{$search_db}};
183 next DATABASE unless exists $schema->{$search_db}->{$search_tbl};
188 PTDEBUG && _d('Ignoring', $search_db, $search_tbl, $col);
192 my $tbl = $schema->{$search_db}->{$search_tbl};
241 foreach my $search_db ( @search_dbs ) {
242 if ( $ignore && grep { $_->{db} eq $search_db } @$ignore ) {
243 PTDEBUG && _d('Ignoring', $search_db);
247 if ( exists $schema->{$search_db}->{$tbl} ) {
248 PTDEBUG && _d('Table', $tbl, 'exists in', $search_db);
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blast/
H A Dblast_app_util.cpp99 if (search_db.NotEmpty()) { in InitializeRemoteBlast()
198 _ASSERT(search_db.Empty()); in InitializeSubject()
205 _ASSERT(search_db.NotEmpty()); in InitializeSubject()
210 CRef<CSeqDB> seqdb = search_db->GetSeqDb(); in InitializeSubject()
211 db_adapter.Reset(new CLocalDbAdapter(*search_db)); in InitializeSubject()
227 if (search_db.NotEmpty()) { in InitializeSubject()
273 if (search_db.NotEmpty()) in s_InitializeExportStrategy()
452 search_db->SetEntrezQueryLimitation(limit); in s_ImportDatabase()
473 search_db->SetGiList(gilist); in s_ImportDatabase()
488 search_db->SetNegativeGiList(gilist); in s_ImportDatabase()
[all …]
H A Dblast_formatter.cpp267 CRef<CSearchDatabase> search_db = db_args->GetSearchDatabase(); in s_InitializeSubject() local
275 _ASSERT(search_db.Empty()); in s_InitializeSubject()
284 _ASSERT(search_db.NotEmpty()); in s_InitializeSubject()
289 CRef<CSeqDB> seqdb = search_db->GetSeqDb(); in s_InitializeSubject()
290 db_adapter.Reset(new CLocalDbAdapter(*search_db)); in s_InitializeSubject()
297 db_adapter.Reset(new CLocalDbAdapter(*search_db)); in s_InitializeSubject()
300 search_db->GetDatabaseName(), in s_InitializeSubject()
307 LOG_POST(Info <<"Remote " << search_db->GetDatabaseName()); in s_InitializeSubject()
378 search_db->SetGiList(gilist); in PrintFormattedOutput()
384 search_db->SetNegativeGiList(gilist); in PrintFormattedOutput()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blast/
H A Dblast_app_util.cpp99 if (search_db.NotEmpty()) { in InitializeRemoteBlast()
214 _ASSERT(search_db.Empty()); in InitializeSubject()
221 _ASSERT(search_db.NotEmpty()); in InitializeSubject()
226 CRef<CSeqDB> seqdb = search_db->GetSeqDb(); in InitializeSubject()
227 db_adapter.Reset(new CLocalDbAdapter(*search_db)); in InitializeSubject()
243 if (search_db.NotEmpty()) { in InitializeSubject()
289 if (search_db.NotEmpty()) in s_InitializeExportStrategy()
468 search_db->SetEntrezQueryLimitation(limit); in s_ImportDatabase()
489 search_db->SetGiList(gilist); in s_ImportDatabase()
504 search_db->SetNegativeGiList(gilist); in s_ImportDatabase()
[all …]
H A Dblast_formatter.cpp267 CRef<CSearchDatabase> search_db = db_args->GetSearchDatabase(); in s_InitializeSubject() local
275 _ASSERT(search_db.Empty()); in s_InitializeSubject()
284 _ASSERT(search_db.NotEmpty()); in s_InitializeSubject()
289 CRef<CSeqDB> seqdb = search_db->GetSeqDb(); in s_InitializeSubject()
290 db_adapter.Reset(new CLocalDbAdapter(*search_db)); in s_InitializeSubject()
297 db_adapter.Reset(new CLocalDbAdapter(*search_db)); in s_InitializeSubject()
300 search_db->GetDatabaseName(), in s_InitializeSubject()
307 LOG_POST(Info <<"Remote " << search_db->GetDatabaseName()); in s_InitializeSubject()
378 search_db->SetGiList(gilist); in PrintFormattedOutput()
384 search_db->SetNegativeGiList(gilist); in PrintFormattedOutput()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/magicblast/
H A Dmagicblast_thread.cpp129 CRef<CSearchDatabase> search_db; in Main() local
134 search_db.Reset(new CSearchDatabase(kDbName, in Main()
145 search_db->SetGiList(gilist.GetNonNullPointer()); in Main()
148 search_db->SetNegativeGiList( in Main()
155 search_db->GetSeqDb()->SetNumberOfThreads(1, true); in Main()
157 thread_db_adapter.Reset(new CLocalDbAdapter(*search_db)); in Main()
H A Dmagicblast_app.cpp235 CRef<CSearchDatabase> search_db = db_args->GetSearchDatabase(); in s_InitializeSubject() local
247 _ASSERT(search_db.Empty()); in s_InitializeSubject()
255 _ASSERT(search_db.NotEmpty()); in s_InitializeSubject()
256 subject_length = search_db->GetSeqDb()->GetTotalLength(); in s_InitializeSubject()
257 num_sequences = search_db->GetSeqDb()->GetNumSeqs(); in s_InitializeSubject()
258 db_adapter.Reset(new CLocalDbAdapter(*search_db)); in s_InitializeSubject()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/blast_format/
H A Dbuild_archive_unit_test.cpp82 … CRef<CSearchDatabase> search_db(new CSearchDatabase("nt", CSearchDatabase::eBlastDbIsNucleotide)); in BOOST_AUTO_TEST_CASE() local
87 search_db); in BOOST_AUTO_TEST_CASE()
158 … CRef<CSearchDatabase> search_db(new CSearchDatabase("nt", CSearchDatabase::eBlastDbIsNucleotide)); in BOOST_AUTO_TEST_CASE() local
164 search_db->SetGiList(gilist.GetPointer()); in BOOST_AUTO_TEST_CASE()
169 search_db); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/blast_format/
H A Dbuild_archive_unit_test.cpp82 … CRef<CSearchDatabase> search_db(new CSearchDatabase("nt", CSearchDatabase::eBlastDbIsNucleotide)); in BOOST_AUTO_TEST_CASE() local
87 search_db); in BOOST_AUTO_TEST_CASE()
158 … CRef<CSearchDatabase> search_db(new CSearchDatabase("nt", CSearchDatabase::eBlastDbIsNucleotide)); in BOOST_AUTO_TEST_CASE() local
164 search_db->SetGiList(gilist.GetPointer()); in BOOST_AUTO_TEST_CASE()
169 search_db); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/format/
H A Dbuild_archive.cpp159 CRef<CSearchDatabase> search_db, in BlastBuildArchive() argument
166 …export_strategy.Reset(new CExportStrategy(iquery_ref, options_ref, search_db, kEmptyStr, num_iters… in BlastBuildArchive()
168 export_strategy.Reset(new CExportStrategy(iquery_ref, options_ref, search_db)); in BlastBuildArchive()
193 CRef<CSearchDatabase> search_db, in BlastBuildArchive() argument
198 …CRef<CExportStrategy> export_strategy(new CExportStrategy(pssm_ref, options_ref, search_db, kEmpty… in BlastBuildArchive()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/format/
H A Dbuild_archive.cpp159 CRef<CSearchDatabase> search_db, in BlastBuildArchive() argument
166 …export_strategy.Reset(new CExportStrategy(iquery_ref, options_ref, search_db, kEmptyStr, num_iters… in BlastBuildArchive()
168 export_strategy.Reset(new CExportStrategy(iquery_ref, options_ref, search_db)); in BlastBuildArchive()
193 CRef<CSearchDatabase> search_db, in BlastBuildArchive() argument
198 …CRef<CExportStrategy> export_strategy(new CExportStrategy(pssm_ref, options_ref, search_db, kEmpty… in BlastBuildArchive()
/dports/lang/erlang-runtime23/otp-OTP-23.3.4.10/lib/ssl/src/
H A Dssl_crl.erl52 case search_db(IsIssuerFun, Db, DbRef) of
77 search_db(IsIssuerFun, _, {extracted, ExtractedCerts})-> function
79 search_db(IsIssuerFun, Db, DbRef) -> function
/dports/lang/erlang-runtime24/otp-OTP-24.1.7/lib/ssl/src/
H A Dssl_crl.erl52 case search_db(IsIssuerFun, Db, DbRef) of
77 search_db(IsIssuerFun, _, {extracted, ExtractedCerts})-> function
79 search_db(IsIssuerFun, Db, DbRef) -> function
/dports/lang/erlang-wx/otp-OTP-24.1.7/lib/ssl/src/
H A Dssl_crl.erl52 case search_db(IsIssuerFun, Db, DbRef) of
77 search_db(IsIssuerFun, _, {extracted, ExtractedCerts})-> function
79 search_db(IsIssuerFun, Db, DbRef) -> function
/dports/lang/erlang/otp-OTP-24.1.7/lib/ssl/src/
H A Dssl_crl.erl52 case search_db(IsIssuerFun, Db, DbRef) of
77 search_db(IsIssuerFun, _, {extracted, ExtractedCerts})-> function
79 search_db(IsIssuerFun, Db, DbRef) -> function
/dports/lang/erlang-java/otp-OTP-24.1.7/lib/ssl/src/
H A Dssl_crl.erl52 case search_db(IsIssuerFun, Db, DbRef) of
77 search_db(IsIssuerFun, _, {extracted, ExtractedCerts})-> function
79 search_db(IsIssuerFun, Db, DbRef) -> function
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/format/
H A Dbuild_archive.hpp71 CRef<CSearchDatabase> search_db,
95 CRef<CSearchDatabase> search_db,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/format/
H A Dbuild_archive.hpp71 CRef<CSearchDatabase> search_db,
95 CRef<CSearchDatabase> search_db,
/dports/databases/db18/db-18.1.40/test/tcl/
H A Dsec001.tcl52 error_check_good search_db [findstring $data $testfile2] 0
66 error_check_good search_db [findstring $data $testfile2] 1
203 error_check_good search_db [findstring $data $testdir/$testfile1] 0
274 error_check_good search_db [findstring $data $testdir/$testfile1] 1
/dports/science/dakota/dakota-6.13.0-release-public.src-UI/src/
H A DHierarchSurrBasedLocalMinimizer.hpp112 void find_center_truth(size_t tr_index, bool search_db = false);
116 void find_star_truth(size_t tr_index, bool search_db = false);
H A DHierarchSurrBasedLocalMinimizer.cpp511 find_center_truth(size_t tr_index, bool search_db) in find_center_truth() argument
518 if (search_db) in find_center_truth()
543 find_star_truth(size_t tr_index, bool search_db) in find_star_truth() argument
550 if (search_db) in find_star_truth()
/dports/databases/evolution-data-server/evolution-data-server-3.42.1/src/addressbook/libedata-book/
H A De-book-backend-sqlitedb-test.c90 search_db (EBookBackendSqliteDB *ebsdb, in search_db() function
158 search_db (ebsdb, "summary query", sexp); in start_tests()
/dports/security/nmap/nmap-7.91/zenmap/zenmapCore/
H A DUmitConf.py107 self.search_db = True
158 def set_search_db(self, search_db): argument
159 self._set_it("search_db", self.boolean_sanity(search_db))
182 search_db = property(get_search_db, set_search_db) variable in SearchConfig
/dports/security/nmap/nmap-7.91/zenmap/zenmapGUI/
H A DSearchGUI.py158 self.options["search_db"] = search_config.search_db
170 self.search_db = SearchDB()
172 self.search_db = SearchDummy()
429 total += len(self.search_db.get_scan_results())
430 for result in self.search_db.search(**self.search_dict):
/dports/security/nmap/nmap-7.91/zenmap/share/zenmap/config/
H A Dzenmap.conf73 search_db = 1

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