Searched refs:second_base_index (Results 1 – 3 of 3) sorted by relevance
250 for (int second_base_index = 0 ; in getRelativeAbundance()251 second_base_index < 4 ; in getRelativeAbundance()252 ++second_base_index) in getRelativeAbundance()255 1f * dinucleotide_base_counts[first_base_index][second_base_index] / in getRelativeAbundance()261 1f * base_counts[second_base_index] / in getRelativeAbundance()264 return_value[first_base_index][second_base_index] = in getRelativeAbundance()
196 for (int second_base_index = 0; second_base_index < 4; ++second_base_index) { in calculateRelativeAbundance() local197 int idx = IDX(first_base_index, second_base_index); in calculateRelativeAbundance()200 float second_base_frequency = float(base_counts[second_base_index]) / (2 * length); in calculateRelativeAbundance()
3051 final int second_base_index = in setArrays() local3059 if(second_base_index < 4) in setArrays()3060 ++positional_base_counts[1][second_base_index]; in setArrays()3065 if(first_base_index < 4 && second_base_index < 4 && third_base_index < 4) in setArrays()3066 ++codon_counts[first_base_index][second_base_index][third_base_index]; in setArrays()