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/dports/biology/py-biopython/biopython-1.79/Bio/SwissProt/
H A D__init__.py782 first_seq, second_seq = description.split(" -> ")
789 extra_info_pos = second_seq.find(" (")
791 extra_info = second_seq[extra_info_pos:]
792 second_seq = second_seq[:extra_info_pos]
795 second_seq = second_seq.replace(" ", "")
797 description = first_seq + " -> " + second_seq + extra_info
839 first_seq, second_seq = description.split(" -> ")
846 extra_info_pos = second_seq.find(" (")
848 extra_info = second_seq[extra_info_pos:]
849 second_seq = second_seq[:extra_info_pos]
[all …]
/dports/biology/py-hits/hits-0.1/hits/
H A Dadapters_cython.pyx22 cpdef simple_hamming_distance(char *first_seq, char *second_seq): argument
23 return adapter_hamming_distance(first_seq, second_seq, len(first_seq), len(second_seq), 0)
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dunion.c187 const AjPSeq second_seq) in union_GetOverlap() argument
190 const AjPStr second_seq_str = ajSeqGetSeqS(second_seq); in union_GetOverlap()
/dports/biology/py-biopython/biopython-1.79/Tests/
H A Dtest_align.py616 second_seq = alignment[1].seq
617 matrix = align_info.pos_specific_score_matrix(second_seq, ["N", "-"])
/dports/lang/python-legacy/Python-2.7.18/Lib/unittest/
H A Dcase.py877 first_seq, second_seq = list(expected_seq), list(actual_seq)
887 second = collections.Counter(second_seq)
890 differences = _count_diff_all_purpose(first_seq, second_seq)
894 differences = _count_diff_hashable(first_seq, second_seq)
/dports/lang/python27/Python-2.7.18/Lib/unittest/
H A Dcase.py877 first_seq, second_seq = list(expected_seq), list(actual_seq)
887 second = collections.Counter(second_seq)
890 differences = _count_diff_all_purpose(first_seq, second_seq)
894 differences = _count_diff_hashable(first_seq, second_seq)
/dports/java/eclipse-pydev/eclipse-pydev-8.2.0/plugins/org.python.pydev.jython_8.2.0.202102211157/Lib/unittest/
H A Dcase.py879 first_seq, second_seq = list(expected_seq), list(actual_seq)
889 second = collections.Counter(second_seq)
892 differences = _count_diff_all_purpose(first_seq, second_seq)
896 differences = _count_diff_hashable(first_seq, second_seq)
/dports/sysutils/uefi-edk2-bhyve-csm/uefi-edk2-aa8d718/AppPkg/Applications/Python/Python-2.7.2/Lib/unittest/
H A Dcase.py872 first_seq, second_seq = list(actual_seq), list(expected_seq)
882 second = collections.Counter(second_seq)
885 differences = _count_diff_all_purpose(first_seq, second_seq)
889 differences = _count_diff_hashable(first_seq, second_seq)
/dports/lang/python310/Python-3.10.1/Lib/unittest/
H A Dcase.py1188 first_seq, second_seq = list(first), list(second)
1191 second = collections.Counter(second_seq)
1194 differences = _count_diff_all_purpose(first_seq, second_seq)
1198 differences = _count_diff_hashable(first_seq, second_seq)
/dports/lang/python39/Python-3.9.9/Lib/unittest/
H A Dcase.py1179 first_seq, second_seq = list(first), list(second)
1182 second = collections.Counter(second_seq)
1185 differences = _count_diff_all_purpose(first_seq, second_seq)
1189 differences = _count_diff_hashable(first_seq, second_seq)
/dports/lang/python311/Python-3.11.0a3/Lib/unittest/
H A Dcase.py1154 first_seq, second_seq = list(first), list(second)
1157 second = collections.Counter(second_seq)
1160 differences = _count_diff_all_purpose(first_seq, second_seq)
1164 differences = _count_diff_hashable(first_seq, second_seq)
/dports/databases/py-gdbm/Python-3.8.12/Lib/unittest/
H A Dcase.py1254 first_seq, second_seq = list(first), list(second)
1257 second = collections.Counter(second_seq)
1260 differences = _count_diff_all_purpose(first_seq, second_seq)
1264 differences = _count_diff_hashable(first_seq, second_seq)
/dports/lang/python37/Python-3.7.12/Lib/unittest/
H A Dcase.py1195 first_seq, second_seq = list(first), list(second)
1198 second = collections.Counter(second_seq)
1201 differences = _count_diff_all_purpose(first_seq, second_seq)
1205 differences = _count_diff_hashable(first_seq, second_seq)
/dports/lang/python-tools/Python-3.8.12/Lib/unittest/
H A Dcase.py1254 first_seq, second_seq = list(first), list(second)
1257 second = collections.Counter(second_seq)
1260 differences = _count_diff_all_purpose(first_seq, second_seq)
1264 differences = _count_diff_hashable(first_seq, second_seq)
/dports/lang/python38/Python-3.8.12/Lib/unittest/
H A Dcase.py1254 first_seq, second_seq = list(first), list(second)
1257 second = collections.Counter(second_seq)
1260 differences = _count_diff_all_purpose(first_seq, second_seq)
1264 differences = _count_diff_hashable(first_seq, second_seq)
/dports/databases/py-sqlite3/Python-3.8.12/Lib/unittest/
H A Dcase.py1254 first_seq, second_seq = list(first), list(second)
1257 second = collections.Counter(second_seq)
1260 differences = _count_diff_all_purpose(first_seq, second_seq)
1264 differences = _count_diff_hashable(first_seq, second_seq)
/dports/x11-toolkits/py-tkinter/Python-3.8.12/Lib/unittest/
H A Dcase.py1254 first_seq, second_seq = list(first), list(second)
1257 second = collections.Counter(second_seq)
1260 differences = _count_diff_all_purpose(first_seq, second_seq)
1264 differences = _count_diff_hashable(first_seq, second_seq)
/dports/converters/wkhtmltopdf/qt-5db36ec/tests/auto/xmlpatterns/
H A DXSLTTODO1302 <xsl:with-param name="second_seq" as="xs:string">
1309 <xsl:param name="second_seq">def</xsl:param>
1310 <xsl:sequence select="$second_seq instance of xs:string"/>
/dports/biology/py-biopython/biopython-1.79/Doc/Tutorial/
H A Dchapter_cookbook.tex1500 second_seq = alignment.get_seq_by_num(1)
1501 my_pssm = summary_align.pos_specific_score_matrix(second_seq, chars_to_ignore=["N"])
/dports/devel/avr-gcc/gcc-10.2.0/gcc/
H A Dgimplify.c14826 gimple_seq second_seq = NULL; in gimplify_body() local
14830 second_seq = gsi_split_seq_after (gsi); in gimplify_body()
14838 second_seq = seq; in gimplify_body()
14843 gimple_seq_add_seq_without_update (&seq, second_seq); in gimplify_body()
/dports/lang/gcc11-devel/gcc-11-20211009/gcc/
H A Dgimplify.c15339 gimple_seq second_seq = NULL; in gimplify_body() local
15343 second_seq = gsi_split_seq_after (gsi); in gimplify_body()
15351 second_seq = seq; in gimplify_body()
15356 gimple_seq_add_seq_without_update (&seq, second_seq); in gimplify_body()
/dports/lang/gcc10-devel/gcc-10-20211008/gcc/
H A Dgimplify.c14866 gimple_seq second_seq = NULL; in gimplify_body() local
14870 second_seq = gsi_split_seq_after (gsi); in gimplify_body()
14878 second_seq = seq; in gimplify_body()
14883 gimple_seq_add_seq_without_update (&seq, second_seq); in gimplify_body()
/dports/misc/cxx_atomics_pic/gcc-11.2.0/gcc/
H A Dgimplify.c15339 gimple_seq second_seq = NULL; in gimplify_body() local
15343 second_seq = gsi_split_seq_after (gsi); in gimplify_body()
15351 second_seq = seq; in gimplify_body()
15356 gimple_seq_add_seq_without_update (&seq, second_seq); in gimplify_body()
/dports/lang/gcc10/gcc-10.3.0/gcc/
H A Dgimplify.c14866 gimple_seq second_seq = NULL; in gimplify_body() local
14870 second_seq = gsi_split_seq_after (gsi); in gimplify_body()
14878 second_seq = seq; in gimplify_body()
14883 gimple_seq_add_seq_without_update (&seq, second_seq); in gimplify_body()
/dports/lang/gcc11/gcc-11.2.0/gcc/
H A Dgimplify.c15339 gimple_seq second_seq = NULL; in gimplify_body() local
15343 second_seq = gsi_split_seq_after (gsi); in gimplify_body()
15351 second_seq = seq; in gimplify_body()
15356 gimple_seq_add_seq_without_update (&seq, second_seq); in gimplify_body()

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