Searched refs:seed_cut (Results 1 – 7 of 7) sorted by relevance
| /dports/biology/diamond/diamond-2.0.13/src/data/ |
| H A D | seed_set.cpp | 64 …&seqs, double max_coverage, const std::vector<bool>* skip, const double seed_cut, const MaskingAlg… in SeedSet() argument
72 const EnumCfg cfg{ &p, 0, 1, SeedEncoding::CONTIGUOUS, skip, true, false, seed_cut, soft_masking }; in SeedSet()
92 HashedSeedSet::HashedSeedSet(Block &seqs, const std::vector<bool>* skip, const double seed_cut, con… in HashedSeedSet() argument
99 …const EnumCfg cfg{ &p, 0, shapes.count(), SeedEncoding::HASHED, skip, false, false, seed_cut, soft… in HashedSeedSet()
|
| H A D | seed_histogram.cpp | 48 …ode, const std::vector<bool>* skip, const bool mask_seeds, const double seed_cut, const MaskingAlg… in SeedHistogram() argument
79 const EnumCfg cfg{ &p_,s,s + 1, code, skip, false, mask_seeds, seed_cut, soft_masking }; in SeedHistogram()
83 …const EnumCfg cfg{ &p_, 0, shapes.count(), code, skip, false, mask_seeds, seed_cut, soft_masking }; in SeedHistogram()
|
| H A D | seed_set.h | 39 …SeedSet(Block &seqs, double max_coverage, const std::vector<bool>* skip, const double seed_cut, co…
56 …HashedSeedSet(Block &seqs, const std::vector<bool>* skip, const double seed_cut, const MaskingAlgo…
|
| H A D | flags.h | 44 const double seed_cut; member
|
| H A D | seed_histogram.h | 90 …ode, const std::vector<bool>* skip, const bool mask_seeds, const double seed_cut, const MaskingAlg…
|
| /dports/biology/diamond/diamond-2.0.13/src/search/ |
| H A D | setup.cpp | 242 const double seed_cut = config.seed_cut_ == 0.0 ? traits.seed_cut : config.seed_cut_; in setup_search() local
243 cfg.seed_complexity_cut = seed_cut * std::log(2.0) * ::shapes[0].weight_; in setup_search()
|
| H A D | search.h | 52 const double seed_cut; member
|