Searched refs:seedival (Results 1 – 7 of 7) sorted by relevance
| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | aligner_sw_driver.h | 333 int seedival, // interval between seeds
384 int seedival, // interval between seeds
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| H A D | aligner_result.h | 1127 int seedival, in setParams() argument
1132 seedival_ = seedival; in setParams()
1139 int seedival() const { return seedival_; } in seedival() function
1371 int seedival = -1,// space between seeds
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| H A D | aligner_sw_driver.cpp | 767 int seedival, // interval between seeds in extendSeeds() argument
1226 seedival, // interval between seeds in extendSeeds()
1400 int seedival, // interval between seeds in extendSeedsPaired() argument
1923 seedival, // interval between seeds in extendSeedsPaired()
2123 seedival, // interval between seeds in extendSeedsPaired()
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| H A D | aligner_result.cpp | 140 int seedival, // space between seeds in init() argument
170 seedival_ = seedival; in init()
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | aligner_sw_driver.h | 345 int seedival, // interval between seeds
396 int seedival, // interval between seeds
1291 int seedival, // interval between seeds in extendSeeds() argument
1751 seedival, // interval between seeds in extendSeeds()
1928 int seedival, // interval between seeds in extendSeedsPaired() argument
2451 seedival, // interval between seeds in extendSeedsPaired()
2653 seedival, // interval between seeds in extendSeedsPaired()
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| H A D | aligner_result.h | 1444 int seedival, in setParams() argument
1449 seedival_ = seedival; in setParams()
1456 int seedival() const { return seedival_; } in seedival() function
1725 int seedival = -1,// space between seeds
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| H A D | aligner_result.cpp | 152 int seedival, // space between seeds in init() argument
201 seedival_ = seedival; in init()
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