/dports/science/py-pymol/pymol-open-source-2.4.0/modules/pymol/ |
H A D | menu.py | 983 'cmd.dist("'+sele+'_polar_conts","('+sele+')","('+sele+ 986 'cmd.dist("'+sele+'_polar_conts","('+sele+') and solvent","('+sele+ 989 'cmd.dist("'+sele+'_polar_conts","('+sele+') and not (solvent)","('+sele+ 992 'cmd.dist("'+sele+'_polar_conts","('+sele+') & !bb.","('+sele+') & !bb.",' 995 'cmd.dist("'+sele+'_polar_conts","('+sele+')","('+sele+ 998 'cmd.dist("'+sele+'_polar_conts","('+sele+') & sc.","('+sele+') & sc.",' 1002 'cmd.dist("'+sele+'_polar_conts","('+sele+') & bb.","('+sele+') & bb.",' 1007 'cmd.dist("'+sele+'_polar_conts","('+sele+')","(byobj ('+sele+')) and (not ('+sele+ 1010 …'cmd.dist("'+sele+'_polar_conts","('+sele+') and not solvent","(byobj ('+sele+')) and (not ('+sele+ 1013 'cmd.dist("'+sele+'_polar_conts","('+sele+')","(not '+sele+ [all …]
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H A D | selector.py | 1 def process(sele): argument 3 if isinstance(sele, tuple): 4 return "%s`%d" % sele 7 return str(sele).replace(u'\u2212', '-')
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H A D | experimenting.py | 108 def minimize(sele='', iter=500, grad=0.01, interval=50, _setup=1, _self=cmd): argument 118 if not sele: 122 sele = names[0] 123 sele = '(' + sele + ')' 125 if not int(_setup) or realtime.setup(sele): 126 _self.async_(realtime.mini, int(iter), float(grad), int(interval), sele)
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/contrib/iapbs/modules/CHARMM/examples/data/ |
H A D | radius.str | 22 scalar wmain set 0.0 sele chem H* end 25 scalar wmain set 2.3 sele chem C* end 26 scalar wmain set 1.8 sele chem O* end 27 scalar wmain set 2.3 sele chem N* end 28 scalar wmain set 2.3 sele chem S* end 33 scalar wmain set 2.04 sele type CY end 34 scalar wmain set 1.52 sele type OY end 35 scalar wmain set 2.23 sele type NT end 39 scalar wmain set 2.04 sele type C end 41 scalar wmain set 1.52 sele type O end [all …]
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/contrib/iapbs/modules/CHARMM/examples/RAS-RAF/data/ |
H A D | radius.str | 22 scalar wmain set 0.0 sele chem H* end 25 scalar wmain set 2.3 sele chem C* end 26 scalar wmain set 1.8 sele chem O* end 27 scalar wmain set 2.3 sele chem N* end 28 scalar wmain set 2.3 sele chem S* end 33 scalar wmain set 2.04 sele type CY end 34 scalar wmain set 1.52 sele type OY end 35 scalar wmain set 2.23 sele type NT end 39 scalar wmain set 2.04 sele type C end 41 scalar wmain set 1.52 sele type O end [all …]
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/dports/science/py-pymol/pymol-open-source-2.4.0/layer3/ |
H A D | Selector.h | 79 void SelectorDelete(PyMOLGlobals * G, const char *sele); 108 int SelectorGetSeleNCSet(PyMOLGlobals * G, SelectorID_t sele); 118 SelectorID_t sele, bool force, bool update_table); 134 int SelectorCountAtoms(PyMOLGlobals * G, int sele, int state); 137 int SelectorCountStates(PyMOLGlobals * G, int sele); 138 int SelectorClassifyAtoms(PyMOLGlobals * G, int sele, int preserve, 230 SelectorTmp(PyMOLGlobals * G, const char * sele) : m_G(G) { in SelectorTmp() argument 231 m_count = SelectorGetTmp(m_G, sele, m_name); in SelectorTmp() 250 PyMOLGlobals* G, const char* sele, bool empty_is_error = true); 255 SelectorTmp2(PyMOLGlobals* G, const char* sele) in SelectorTmp2() [all …]
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H A D | SelectorTmp.cpp | 25 PyMOLGlobals* G, const char* sele, bool empty_is_error) in make() argument 27 if (empty_is_error && !sele[0]) { in make() 33 auto res = SelectorGetTmpResult(G, sele, self.m_name); in make() 47 PyMOLGlobals* G, const char* sele, bool empty_is_error) in make() argument 49 if (empty_is_error && !sele[0]) { in make() 55 auto res = SelectorGetTmp2Result(G, sele, self.m_name); in make()
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H A D | Selector.cpp | 2815 used[a].sele = sele; in SelectorColorectionGet() 7612 std::swap(base[1].sele, base[0].sele); in SelectorModulate1() 9001 base[0].sele = std::move(base[1].sele); in SelectorLogic1() 9030 base[1].sele = std::move(base[0].sele); in SelectorLogic1() 9058 base[1].sele = std::move(base[0].sele); in SelectorLogic1() 9085 base[1].sele = std::move(base[0].sele); in SelectorLogic1() 9302 base[1].sele = std::move(base[0].sele); in SelectorLogic1() 9357 base[1].sele = std::move(base[0].sele); in SelectorLogic1() 9402 base[1].sele = std::move(base[0].sele); in SelectorLogic1() 9495 base[1].sele = std::move(base[0].sele); in SelectorLogic1() [all …]
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H A D | Executive.h | 226 const char* sele, const char* name, const char* resn, const char* resi, 268 const char* sele, int enable, int quiet, int merge, int state, 331 const char *sele, int state, int quiet, int updates); 333 int index, const char *sele, 398 pymol::Result<> ExecutiveOrient(PyMOLGlobals* G, const char* sele, 525 pymol::Result<> ExecutiveSetSymmetry(PyMOLGlobals* G, const char* sele, 536 int ExecutiveUnsetSetting(PyMOLGlobals * G, int index, const char *sele, 618 const char *sele, float fbuf, int state, 624 const char *sele, float fbuf, int state, 630 const char *sele, float fbuf, int state, [all …]
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H A D | AtomIterators.cpp | 36 sele = SelectorIndexByName(G, stmp); in SeleAtomIterator() 65 if(!SelectorIsMember(G, obj->AtomInfo[atm].selEntry, sele)) in next() 103 sele = sele_; in SeleCoordIterator() 160 if (sele > 0 && !SelectorIsMember(G, getAtomInfo()->selEntry, sele)) in next()
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/contrib/iapbs/modules/CHARMM/examples/save/ |
H A D | apbs_vis.out.save | 175 PBEQ> scalar wmain set 0.0 sele chem H* end 181 PBEQ> scalar wmain set 2.3 sele chem C* end 184 PBEQ> scalar wmain set 1.8 sele chem O* end 187 PBEQ> scalar wmain set 2.3 sele chem N* end 190 PBEQ> scalar wmain set 2.3 sele chem S* end 200 PBEQ> scalar wmain set 2.04 sele type CY end 203 PBEQ> scalar wmain set 1.52 sele type OY end 206 PBEQ> scalar wmain set 2.23 sele type NT end 215 PBEQ> scalar wmain set 2.04 sele type C end 220 PBEQ> scalar wmain set 1.52 sele type O end [all …]
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H A D | apbs_elstat.out.save | 201 PBEQ> scalar wmain set 0.0 sele chem H* end 207 PBEQ> scalar wmain set 2.3 sele chem C* end 210 PBEQ> scalar wmain set 1.8 sele chem O* end 213 PBEQ> scalar wmain set 2.3 sele chem N* end 216 PBEQ> scalar wmain set 2.3 sele chem S* end 226 PBEQ> scalar wmain set 2.04 sele type CY end 229 PBEQ> scalar wmain set 1.52 sele type OY end 232 PBEQ> scalar wmain set 2.23 sele type NT end 241 PBEQ> scalar wmain set 2.04 sele type C end 452 PBEQ> sele all END [all …]
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H A D | apbs_elstat_auto.out.save | 201 PBEQ> scalar wmain set 0.0 sele chem H* end 207 PBEQ> scalar wmain set 2.3 sele chem C* end 210 PBEQ> scalar wmain set 1.8 sele chem O* end 213 PBEQ> scalar wmain set 2.3 sele chem N* end 216 PBEQ> scalar wmain set 2.3 sele chem S* end 226 PBEQ> scalar wmain set 2.04 sele type CY end 229 PBEQ> scalar wmain set 1.52 sele type OY end 232 PBEQ> scalar wmain set 2.23 sele type NT end 241 PBEQ> scalar wmain set 2.04 sele type C end 452 PBEQ> sele all END [all …]
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H A D | apbs_maps_read.out.save | 175 PBEQ> scalar wmain set 0.0 sele chem H* end 181 PBEQ> scalar wmain set 2.3 sele chem C* end 184 PBEQ> scalar wmain set 1.8 sele chem O* end 187 PBEQ> scalar wmain set 2.3 sele chem N* end 190 PBEQ> scalar wmain set 2.3 sele chem S* end 200 PBEQ> scalar wmain set 2.04 sele type CY end 203 PBEQ> scalar wmain set 1.52 sele type OY end 206 PBEQ> scalar wmain set 2.23 sele type NT end 215 PBEQ> scalar wmain set 2.04 sele type C end 220 PBEQ> scalar wmain set 1.52 sele type O end [all …]
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H A D | apbs_maps.out.save | 175 PBEQ> scalar wmain set 0.0 sele chem H* end 181 PBEQ> scalar wmain set 2.3 sele chem C* end 184 PBEQ> scalar wmain set 1.8 sele chem O* end 187 PBEQ> scalar wmain set 2.3 sele chem N* end 190 PBEQ> scalar wmain set 2.3 sele chem S* end 200 PBEQ> scalar wmain set 2.04 sele type CY end 203 PBEQ> scalar wmain set 1.52 sele type OY end 206 PBEQ> scalar wmain set 2.23 sele type NT end 215 PBEQ> scalar wmain set 2.04 sele type C end 220 PBEQ> scalar wmain set 1.52 sele type O end [all …]
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H A D | apbs_md_auto.out.save | 186 PBEQ> scalar wmain set 0.0 sele chem H* end 192 PBEQ> scalar wmain set 2.3 sele chem C* end 195 PBEQ> scalar wmain set 1.8 sele chem O* end 198 PBEQ> scalar wmain set 2.3 sele chem N* end 201 PBEQ> scalar wmain set 2.3 sele chem S* end 211 PBEQ> scalar wmain set 2.04 sele type CY end 214 PBEQ> scalar wmain set 1.52 sele type OY end 217 PBEQ> scalar wmain set 2.23 sele type NT end 226 PBEQ> scalar wmain set 2.04 sele type C end 231 PBEQ> scalar wmain set 1.52 sele type O end [all …]
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H A D | apbs_md.out.save | 186 PBEQ> scalar wmain set 0.0 sele chem H* end 192 PBEQ> scalar wmain set 2.3 sele chem C* end 195 PBEQ> scalar wmain set 1.8 sele chem O* end 198 PBEQ> scalar wmain set 2.3 sele chem N* end 201 PBEQ> scalar wmain set 2.3 sele chem S* end 211 PBEQ> scalar wmain set 2.04 sele type CY end 214 PBEQ> scalar wmain set 1.52 sele type OY end 217 PBEQ> scalar wmain set 2.23 sele type NT end 226 PBEQ> scalar wmain set 2.04 sele type C end 231 PBEQ> scalar wmain set 1.52 sele type O end [all …]
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/dports/misc/gimp-help-en/gimp-help-2.10.0/po/pt_BR/menus/ |
H A D | select.po | 74 "o tamanho da seleção." 132 "Quando você aumenta uma seleção retangular, o resultado é uma seleção " 230 "de seleções enevoadas, a suavização da seleção é preservada, apesar " 317 "na seleção." 470 "seleção</" 605 "seleção " 678 "seleção segue a linha pontilhada da antiga seleção. O anti-serrilhamento " 866 "seleção</link>." 1241 "seleção ficar maior." 1518 "enquanto há uma seleção flutuante, a seleção flutuante é transformada " [all …]
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/dports/science/py-pymol/pymol-open-source-2.4.0/modules/pymol/wizard/ |
H A D | appearance.py | 190 sele = "(%s pk1)"%self.scope_dict[self.current_scope][1] 193 cmmd = mode+'("%s","%s")'%(color,sele) 196 sele = "(%s pk1)"%self.scope_dict[self.current_scope][1] 199 cmmd = mode+'("%s","%s")'%(what,sele) 209 sele = "(%s %s)"%(self.scope_dict[self.current_scope][1],selection) 212 cmmd = mode+'("%s","%s")'%(color,sele) 215 sele = "(%s %s)"%(self.scope_dict[self.current_scope][1],selection) 218 cmmd = mode+'("%s","%s")'%(what,sele)
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/dports/science/py-pymol/pymol-open-source-2.4.0/modules/pmg_tk/ |
H A D | Setting.py | 108 def __init__(self,app, sele='', state=0): argument 111 self.sele = sele 120 self.cmd.set(name, value, self.sele, self.state, log=1, quiet=0) 123 return self.cmd.get(name, self.sele, self.state) 126 r = self.cmd.get_setting_tuple(name, self.sele, self.state) 149 for a in self.cmd.get_setting_updates(self.sele, self.state) or ():
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/dports/misc/gimp-help-en/gimp-help-2.10.0/po/pt_BR/toolbox/ |
H A D | selection.po | 197 "fazer a seleção, a seleção resultante será subtraída da seleção existente. O " 289 "seleção modificam:" 335 "seleção " 359 "será mais escuro do que o que está na seleção, e então a seleção aparece " 559 "seleção para tornar a criação de uma seleção mais fácil, respeitando " 1209 "seleção, e " 1628 "seleção desejada:" 1755 "seleção:" 1910 "de seleção</link>." 1980 "<emphasis>antes</emphasis> de começar a fazer a seleção, a seleção " [all …]
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/dports/games/xpuzzletama/xpuzzletama/ |
H A D | xtama_main.c | 40 else XMoveWindow( dpy , sele ,150 , 300 ) ; in tama_title() 42 XClearWindow( dpy , sele ) ; in tama_title() 44 XMapWindow( dpy , sele ) ; in tama_title() 83 XMoveWindow( dpy , sele , i , 300 ) ; in tama_title() 94 XClearWindow( dpy , sele ) ; in tama_title() 99 XMoveWindow( dpy , sele , i , 300 ) ; in tama_title() 110 XMoveWindow( dpy , sele , i , 300 ) ; in tama_title() 119 XClearWindow( dpy , sele ) ; in tama_title() 124 XMoveWindow( dpy , sele , i , 300 ) ; in tama_title() 137 XUnmapWindow( dpy , sele ) ; in tama_title() [all …]
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/dports/science/py-pymol/pymol-open-source-2.4.0/examples/devel/ |
H A D | extend_demo01.py | 10 def my_color(color="red",sele="name CA"): argument 11 print("I am coloring "+color+ " all atoms in selection: "+sele) 12 cmd.color(color, sele)
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H A D | mutate02.py | 25 for sele in stored.list: 29 cmd.edit(sele) 41 cmd.indicate("byres "+sele)
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/dports/science/py-pymol/pymol-open-source-2.4.0/modules/chempy/bmin/ |
H A D | realtime.py | 16 def assign(sele,preserve=0): argument 26 model = cmd.get_model(sele) 50 cmd.alter("((%s) and (index %s))" % (sele,at.index), 64 def setup(sele,preserve=0): argument 70 model = cmd.get_model(sele)
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