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/dports/science/py-pymol/pymol-open-source-2.4.0/modules/pymol/
H A Dmenu.py983 'cmd.dist("'+sele+'_polar_conts","('+sele+')","('+sele+
986 'cmd.dist("'+sele+'_polar_conts","('+sele+') and solvent","('+sele+
989 'cmd.dist("'+sele+'_polar_conts","('+sele+') and not (solvent)","('+sele+
992 'cmd.dist("'+sele+'_polar_conts","('+sele+') & !bb.","('+sele+') & !bb.",'
995 'cmd.dist("'+sele+'_polar_conts","('+sele+')","('+sele+
998 'cmd.dist("'+sele+'_polar_conts","('+sele+') & sc.","('+sele+') & sc.",'
1002 'cmd.dist("'+sele+'_polar_conts","('+sele+') & bb.","('+sele+') & bb.",'
1007 'cmd.dist("'+sele+'_polar_conts","('+sele+')","(byobj ('+sele+')) and (not ('+sele+
1010 …'cmd.dist("'+sele+'_polar_conts","('+sele+') and not solvent","(byobj ('+sele+')) and (not ('+sele+
1013 'cmd.dist("'+sele+'_polar_conts","('+sele+')","(not '+sele+
[all …]
H A Dselector.py1 def process(sele): argument
3 if isinstance(sele, tuple):
4 return "%s`%d" % sele
7 return str(sele).replace(u'\u2212', '-')
H A Dexperimenting.py108 def minimize(sele='', iter=500, grad=0.01, interval=50, _setup=1, _self=cmd): argument
118 if not sele:
122 sele = names[0]
123 sele = '(' + sele + ')'
125 if not int(_setup) or realtime.setup(sele):
126 _self.async_(realtime.mini, int(iter), float(grad), int(interval), sele)
/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/contrib/iapbs/modules/CHARMM/examples/data/
H A Dradius.str22 scalar wmain set 0.0 sele chem H* end
25 scalar wmain set 2.3 sele chem C* end
26 scalar wmain set 1.8 sele chem O* end
27 scalar wmain set 2.3 sele chem N* end
28 scalar wmain set 2.3 sele chem S* end
33 scalar wmain set 2.04 sele type CY end
34 scalar wmain set 1.52 sele type OY end
35 scalar wmain set 2.23 sele type NT end
39 scalar wmain set 2.04 sele type C end
41 scalar wmain set 1.52 sele type O end
[all …]
/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/contrib/iapbs/modules/CHARMM/examples/RAS-RAF/data/
H A Dradius.str22 scalar wmain set 0.0 sele chem H* end
25 scalar wmain set 2.3 sele chem C* end
26 scalar wmain set 1.8 sele chem O* end
27 scalar wmain set 2.3 sele chem N* end
28 scalar wmain set 2.3 sele chem S* end
33 scalar wmain set 2.04 sele type CY end
34 scalar wmain set 1.52 sele type OY end
35 scalar wmain set 2.23 sele type NT end
39 scalar wmain set 2.04 sele type C end
41 scalar wmain set 1.52 sele type O end
[all …]
/dports/science/py-pymol/pymol-open-source-2.4.0/layer3/
H A DSelector.h79 void SelectorDelete(PyMOLGlobals * G, const char *sele);
108 int SelectorGetSeleNCSet(PyMOLGlobals * G, SelectorID_t sele);
118 SelectorID_t sele, bool force, bool update_table);
134 int SelectorCountAtoms(PyMOLGlobals * G, int sele, int state);
137 int SelectorCountStates(PyMOLGlobals * G, int sele);
138 int SelectorClassifyAtoms(PyMOLGlobals * G, int sele, int preserve,
230 SelectorTmp(PyMOLGlobals * G, const char * sele) : m_G(G) { in SelectorTmp() argument
231 m_count = SelectorGetTmp(m_G, sele, m_name); in SelectorTmp()
250 PyMOLGlobals* G, const char* sele, bool empty_is_error = true);
255 SelectorTmp2(PyMOLGlobals* G, const char* sele) in SelectorTmp2()
[all …]
H A DSelectorTmp.cpp25 PyMOLGlobals* G, const char* sele, bool empty_is_error) in make() argument
27 if (empty_is_error && !sele[0]) { in make()
33 auto res = SelectorGetTmpResult(G, sele, self.m_name); in make()
47 PyMOLGlobals* G, const char* sele, bool empty_is_error) in make() argument
49 if (empty_is_error && !sele[0]) { in make()
55 auto res = SelectorGetTmp2Result(G, sele, self.m_name); in make()
H A DSelector.cpp2815 used[a].sele = sele; in SelectorColorectionGet()
7612 std::swap(base[1].sele, base[0].sele); in SelectorModulate1()
9001 base[0].sele = std::move(base[1].sele); in SelectorLogic1()
9030 base[1].sele = std::move(base[0].sele); in SelectorLogic1()
9058 base[1].sele = std::move(base[0].sele); in SelectorLogic1()
9085 base[1].sele = std::move(base[0].sele); in SelectorLogic1()
9302 base[1].sele = std::move(base[0].sele); in SelectorLogic1()
9357 base[1].sele = std::move(base[0].sele); in SelectorLogic1()
9402 base[1].sele = std::move(base[0].sele); in SelectorLogic1()
9495 base[1].sele = std::move(base[0].sele); in SelectorLogic1()
[all …]
H A DExecutive.h226 const char* sele, const char* name, const char* resn, const char* resi,
268 const char* sele, int enable, int quiet, int merge, int state,
331 const char *sele, int state, int quiet, int updates);
333 int index, const char *sele,
398 pymol::Result<> ExecutiveOrient(PyMOLGlobals* G, const char* sele,
525 pymol::Result<> ExecutiveSetSymmetry(PyMOLGlobals* G, const char* sele,
536 int ExecutiveUnsetSetting(PyMOLGlobals * G, int index, const char *sele,
618 const char *sele, float fbuf, int state,
624 const char *sele, float fbuf, int state,
630 const char *sele, float fbuf, int state,
[all …]
H A DAtomIterators.cpp36 sele = SelectorIndexByName(G, stmp); in SeleAtomIterator()
65 if(!SelectorIsMember(G, obj->AtomInfo[atm].selEntry, sele)) in next()
103 sele = sele_; in SeleCoordIterator()
160 if (sele > 0 && !SelectorIsMember(G, getAtomInfo()->selEntry, sele)) in next()
/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/contrib/iapbs/modules/CHARMM/examples/save/
H A Dapbs_vis.out.save175 PBEQ> scalar wmain set 0.0 sele chem H* end
181 PBEQ> scalar wmain set 2.3 sele chem C* end
184 PBEQ> scalar wmain set 1.8 sele chem O* end
187 PBEQ> scalar wmain set 2.3 sele chem N* end
190 PBEQ> scalar wmain set 2.3 sele chem S* end
200 PBEQ> scalar wmain set 2.04 sele type CY end
203 PBEQ> scalar wmain set 1.52 sele type OY end
206 PBEQ> scalar wmain set 2.23 sele type NT end
215 PBEQ> scalar wmain set 2.04 sele type C end
220 PBEQ> scalar wmain set 1.52 sele type O end
[all …]
H A Dapbs_elstat.out.save201 PBEQ> scalar wmain set 0.0 sele chem H* end
207 PBEQ> scalar wmain set 2.3 sele chem C* end
210 PBEQ> scalar wmain set 1.8 sele chem O* end
213 PBEQ> scalar wmain set 2.3 sele chem N* end
216 PBEQ> scalar wmain set 2.3 sele chem S* end
226 PBEQ> scalar wmain set 2.04 sele type CY end
229 PBEQ> scalar wmain set 1.52 sele type OY end
232 PBEQ> scalar wmain set 2.23 sele type NT end
241 PBEQ> scalar wmain set 2.04 sele type C end
452 PBEQ> sele all END
[all …]
H A Dapbs_elstat_auto.out.save201 PBEQ> scalar wmain set 0.0 sele chem H* end
207 PBEQ> scalar wmain set 2.3 sele chem C* end
210 PBEQ> scalar wmain set 1.8 sele chem O* end
213 PBEQ> scalar wmain set 2.3 sele chem N* end
216 PBEQ> scalar wmain set 2.3 sele chem S* end
226 PBEQ> scalar wmain set 2.04 sele type CY end
229 PBEQ> scalar wmain set 1.52 sele type OY end
232 PBEQ> scalar wmain set 2.23 sele type NT end
241 PBEQ> scalar wmain set 2.04 sele type C end
452 PBEQ> sele all END
[all …]
H A Dapbs_maps_read.out.save175 PBEQ> scalar wmain set 0.0 sele chem H* end
181 PBEQ> scalar wmain set 2.3 sele chem C* end
184 PBEQ> scalar wmain set 1.8 sele chem O* end
187 PBEQ> scalar wmain set 2.3 sele chem N* end
190 PBEQ> scalar wmain set 2.3 sele chem S* end
200 PBEQ> scalar wmain set 2.04 sele type CY end
203 PBEQ> scalar wmain set 1.52 sele type OY end
206 PBEQ> scalar wmain set 2.23 sele type NT end
215 PBEQ> scalar wmain set 2.04 sele type C end
220 PBEQ> scalar wmain set 1.52 sele type O end
[all …]
H A Dapbs_maps.out.save175 PBEQ> scalar wmain set 0.0 sele chem H* end
181 PBEQ> scalar wmain set 2.3 sele chem C* end
184 PBEQ> scalar wmain set 1.8 sele chem O* end
187 PBEQ> scalar wmain set 2.3 sele chem N* end
190 PBEQ> scalar wmain set 2.3 sele chem S* end
200 PBEQ> scalar wmain set 2.04 sele type CY end
203 PBEQ> scalar wmain set 1.52 sele type OY end
206 PBEQ> scalar wmain set 2.23 sele type NT end
215 PBEQ> scalar wmain set 2.04 sele type C end
220 PBEQ> scalar wmain set 1.52 sele type O end
[all …]
H A Dapbs_md_auto.out.save186 PBEQ> scalar wmain set 0.0 sele chem H* end
192 PBEQ> scalar wmain set 2.3 sele chem C* end
195 PBEQ> scalar wmain set 1.8 sele chem O* end
198 PBEQ> scalar wmain set 2.3 sele chem N* end
201 PBEQ> scalar wmain set 2.3 sele chem S* end
211 PBEQ> scalar wmain set 2.04 sele type CY end
214 PBEQ> scalar wmain set 1.52 sele type OY end
217 PBEQ> scalar wmain set 2.23 sele type NT end
226 PBEQ> scalar wmain set 2.04 sele type C end
231 PBEQ> scalar wmain set 1.52 sele type O end
[all …]
H A Dapbs_md.out.save186 PBEQ> scalar wmain set 0.0 sele chem H* end
192 PBEQ> scalar wmain set 2.3 sele chem C* end
195 PBEQ> scalar wmain set 1.8 sele chem O* end
198 PBEQ> scalar wmain set 2.3 sele chem N* end
201 PBEQ> scalar wmain set 2.3 sele chem S* end
211 PBEQ> scalar wmain set 2.04 sele type CY end
214 PBEQ> scalar wmain set 1.52 sele type OY end
217 PBEQ> scalar wmain set 2.23 sele type NT end
226 PBEQ> scalar wmain set 2.04 sele type C end
231 PBEQ> scalar wmain set 1.52 sele type O end
[all …]
/dports/misc/gimp-help-en/gimp-help-2.10.0/po/pt_BR/menus/
H A Dselect.po74 "o tamanho da seleção."
132 "Quando você aumenta uma seleção retangular, o resultado é uma seleção "
230 "de seleções enevoadas, a suavização da seleção é preservada, apesar "
317 "na seleção."
470 "seleção</"
605 "seleção "
678 "seleção segue a linha pontilhada da antiga seleção. O anti-serrilhamento "
866 "seleção</link>."
1241 "seleção ficar maior."
1518 "enquanto há uma seleção flutuante, a seleção flutuante é transformada "
[all …]
/dports/science/py-pymol/pymol-open-source-2.4.0/modules/pymol/wizard/
H A Dappearance.py190 sele = "(%s pk1)"%self.scope_dict[self.current_scope][1]
193 cmmd = mode+'("%s","%s")'%(color,sele)
196 sele = "(%s pk1)"%self.scope_dict[self.current_scope][1]
199 cmmd = mode+'("%s","%s")'%(what,sele)
209 sele = "(%s %s)"%(self.scope_dict[self.current_scope][1],selection)
212 cmmd = mode+'("%s","%s")'%(color,sele)
215 sele = "(%s %s)"%(self.scope_dict[self.current_scope][1],selection)
218 cmmd = mode+'("%s","%s")'%(what,sele)
/dports/science/py-pymol/pymol-open-source-2.4.0/modules/pmg_tk/
H A DSetting.py108 def __init__(self,app, sele='', state=0): argument
111 self.sele = sele
120 self.cmd.set(name, value, self.sele, self.state, log=1, quiet=0)
123 return self.cmd.get(name, self.sele, self.state)
126 r = self.cmd.get_setting_tuple(name, self.sele, self.state)
149 for a in self.cmd.get_setting_updates(self.sele, self.state) or ():
/dports/misc/gimp-help-en/gimp-help-2.10.0/po/pt_BR/toolbox/
H A Dselection.po197 "fazer a seleção, a seleção resultante será subtraída da seleção existente. O "
289 "seleção modificam:"
335 "seleção "
359 "será mais escuro do que o que está na seleção, e então a seleção aparece "
559 "seleção para tornar a criação de uma seleção mais fácil, respeitando "
1209 "seleção, e "
1628 "seleção desejada:"
1755 "seleção:"
1910 "de seleção</link>."
1980 "<emphasis>antes</emphasis> de começar a fazer a seleção, a seleção "
[all …]
/dports/games/xpuzzletama/xpuzzletama/
H A Dxtama_main.c40 else XMoveWindow( dpy , sele ,150 , 300 ) ; in tama_title()
42 XClearWindow( dpy , sele ) ; in tama_title()
44 XMapWindow( dpy , sele ) ; in tama_title()
83 XMoveWindow( dpy , sele , i , 300 ) ; in tama_title()
94 XClearWindow( dpy , sele ) ; in tama_title()
99 XMoveWindow( dpy , sele , i , 300 ) ; in tama_title()
110 XMoveWindow( dpy , sele , i , 300 ) ; in tama_title()
119 XClearWindow( dpy , sele ) ; in tama_title()
124 XMoveWindow( dpy , sele , i , 300 ) ; in tama_title()
137 XUnmapWindow( dpy , sele ) ; in tama_title()
[all …]
/dports/science/py-pymol/pymol-open-source-2.4.0/examples/devel/
H A Dextend_demo01.py10 def my_color(color="red",sele="name CA"): argument
11 print("I am coloring "+color+ " all atoms in selection: "+sele)
12 cmd.color(color, sele)
H A Dmutate02.py25 for sele in stored.list:
29 cmd.edit(sele)
41 cmd.indicate("byres "+sele)
/dports/science/py-pymol/pymol-open-source-2.4.0/modules/chempy/bmin/
H A Drealtime.py16 def assign(sele,preserve=0): argument
26 model = cmd.get_model(sele)
50 cmd.alter("((%s) and (index %s))" % (sele,at.index),
64 def setup(sele,preserve=0): argument
70 model = cmd.get_model(sele)

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