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/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c718 numeric_t *selfdist; /* Saved for use in some formulas */ member
2640 NJ->selfdist = (numeric_t *)mymalloc(sizeof(numeric_t)*NJ->maxnodes); in InitNJ()
2641 for (iNode = 0; iNode < NJ->maxnodes; iNode++) NJ->selfdist[iNode] = 0; in InitNJ()
2690 NJ->selfdist = myfree(NJ->selfdist, sizeof(numeric_t)*NJ->maxnodes); in FreeNJ()
2874 - NJ->selfdist[join.i] * NJ->selfweight[join.i] - rawIJ * join.weight; in FastNJ()
2876 - NJ->selfdist[join.j] * NJ->selfweight[join.j] - rawIJ * join.weight; in FastNJ()
2959 besthit_t selfdist; in FastNJ() local
2961 NJ->selfdist[newnode] = selfdist.dist; in FastNJ()
2962 NJ->selfweight[newnode] = selfdist.weight; in FastNJ()
7593 * (dist.dist * dist.weight * nActive - NJ->selfweight[iNode] * NJ->selfdist[iNode]); in SetOutDistance()
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