/dports/games/libretro-scummvm/scummvm-7b1e929/engines/mads/ |
H A D | sequence.cpp | 103 uint seqIndex = 0; in add() local 104 while ((seqIndex < _entries.size()) && _entries[seqIndex]._active) in add() 105 ++seqIndex; in add() 106 if (seqIndex == _entries.size()) in add() 137 _entries[seqIndex]._flags = 0; in add() 144 return seqIndex; in add() 149 uint seqIndex; in addTimer() local 150 for (seqIndex = 0; seqIndex < _entries.size(); ++seqIndex) { in addTimer() 169 return seqIndex; in addTimer() 226 remove(seqIndex); in loadSprites() [all …]
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H A D | sequence.h | 105 void remove(int seqIndex); 107 void setSpriteSlot(int seqIndex, SpriteSlot &spriteSlot); 108 bool loadSprites(int seqIndex); 111 void setAnimRange(int seqIndex, int startVal, int endVal); 113 void setDepth(int seqIndex, int depth); 114 void setPosition(int seqIndex, const Common::Point &pt); 125 void setMsgLayout(int seqIndex); 126 void setDone(int seqIndex); 127 void setMotion(int seqIndex, int flags, int deltaX, int deltaY);
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H A D | hotspots.cpp | 58 int DynamicHotspots::add(int descId, int verbId, byte syntax, int seqIndex, const Common::Rect &bou… in add() argument 68 _entries[idx]._seqIndex = seqIndex; in add() 82 if (seqIndex >= 0) { in add() 83 _vm->_game->_scene._sequences[seqIndex]._dynamicHotspotIndex = idx; in add() 90 int DynamicHotspots::add(int descId, int verbId, int seqIndex, const Common::Rect &bounds) { in add() argument 100 _entries[idx]._seqIndex = seqIndex; in add() 112 if (seqIndex >= 0) in add() 113 _vm->_game->_scene._sequences[seqIndex]._dynamicHotspotIndex = idx; in add()
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/dports/games/scummvm/scummvm-2.5.1/engines/mads/ |
H A D | sequence.cpp | 103 uint seqIndex = 0; in add() local 104 while ((seqIndex < _entries.size()) && _entries[seqIndex]._active) in add() 105 ++seqIndex; in add() 106 if (seqIndex == _entries.size()) in add() 137 _entries[seqIndex]._flags = 0; in add() 144 return seqIndex; in add() 149 uint seqIndex; in addTimer() local 150 for (seqIndex = 0; seqIndex < _entries.size(); ++seqIndex) { in addTimer() 169 return seqIndex; in addTimer() 226 remove(seqIndex); in loadSprites() [all …]
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H A D | sequence.h | 105 void remove(int seqIndex); 107 void setSpriteSlot(int seqIndex, SpriteSlot &spriteSlot); 108 bool loadSprites(int seqIndex); 111 void setAnimRange(int seqIndex, int startVal, int endVal); 113 void setDepth(int seqIndex, int depth); 114 void setPosition(int seqIndex, const Common::Point &pt); 125 void setMsgLayout(int seqIndex); 126 void setDone(int seqIndex); 127 void setMotion(int seqIndex, int flags, int deltaX, int deltaY);
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H A D | hotspots.cpp | 58 int DynamicHotspots::add(int descId, int verbId, byte syntax, int seqIndex, const Common::Rect &bou… in add() argument 68 _entries[idx]._seqIndex = seqIndex; in add() 82 if (seqIndex >= 0) { in add() 83 _vm->_game->_scene._sequences[seqIndex]._dynamicHotspotIndex = idx; in add() 90 int DynamicHotspots::add(int descId, int verbId, int seqIndex, const Common::Rect &bounds) { in add() argument 100 _entries[idx]._seqIndex = seqIndex; in add() 112 if (seqIndex >= 0) in add() 113 _vm->_game->_scene._sequences[seqIndex]._dynamicHotspotIndex = idx; in add()
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/dports/biology/jalview/jalview/test/jalview/gui/ |
H A D | SeqPanelTest.java | 248 assertEquals(pos.seqIndex, 0); in testFindMousePosition_unwrapped() 303 assertEquals(pos.seqIndex, -1); in testFindMousePosition_wrapped_annotations() 313 assertEquals(pos.seqIndex, 0); in testFindMousePosition_wrapped_annotations() 323 assertEquals(pos.seqIndex, 0); in testFindMousePosition_wrapped_annotations() 333 assertEquals(pos.seqIndex, 1); in testFindMousePosition_wrapped_annotations() 343 assertEquals(pos.seqIndex, 1); in testFindMousePosition_wrapped_annotations() 429 assertEquals(pos.seqIndex, 0); in testFindMousePosition_wrapped_annotations() 488 assertEquals(pos.seqIndex, 0); in testFindMousePosition_wrapped_scaleAbove() 498 assertEquals(pos.seqIndex, 0); in testFindMousePosition_wrapped_scaleAbove() 508 assertEquals(pos.seqIndex, 1); in testFindMousePosition_wrapped_scaleAbove() [all …]
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/dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/ |
H A D | cddposutil.c | 682 for(seqIndex = 0; seqIndex < numseq; seqIndex++) { in CddposComputeExtents() 784 for (seqIndex = 0; seqIndex <= numseq; seqIndex++) { in CddposComputeSequenceWeights() 801 for (seqIndex = 0; seqIndex <= numseq; seqIndex++) { in CddposComputeSequenceWeights() 810 for(seqIndex = 0; seqIndex < numParticipating; seqIndex++) { in CddposComputeSequenceWeights() 821 for(seqIndex = 0; seqIndex < numParticipating; seqIndex++) { in CddposComputeSequenceWeights() 830 for (seqIndex = 0; seqIndex < numParticipating; seqIndex++) { in CddposComputeSequenceWeights() 835 for (seqIndex = 0; seqIndex < numParticipating; seqIndex++) { in CddposComputeSequenceWeights() 841 for (seqIndex = 0; seqIndex < numParticipating; seqIndex++) { in CddposComputeSequenceWeights() 2312 for(seqIndex = 1; seqIndex < numSeqs; seqIndex++) { in CddposProcessAlignment() 2329 for(seqIndex = 1; seqIndex < numSeqs; seqIndex++) { in CddposProcessAlignment() [all …]
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/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | posit.c | 1245 for(seqIndex = 0; seqIndex < numseq; seqIndex++) { in posComputeExtents() 1355 for (seqIndex = 0; seqIndex <= numseq; seqIndex++) { in posComputeSequenceWeights() 1379 for (seqIndex = 0; seqIndex <= numseq; seqIndex++) { in posComputeSequenceWeights() 1391 for(seqIndex = 0; seqIndex < numParticipating; seqIndex++) { in posComputeSequenceWeights() 1409 for(seqIndex = 0; seqIndex < numParticipating; seqIndex++) { in posComputeSequenceWeights() 1426 for (seqIndex = 0; seqIndex < numParticipating; seqIndex++) { in posComputeSequenceWeights() 1436 for (seqIndex = 0; seqIndex < numParticipating; seqIndex++) { in posComputeSequenceWeights() 3151 for (seqIndex = 0; seqIndex < numSeqs; seqIndex++) in posPreprocessAlignment() 3172 for(seqIndex = 0; seqIndex < numSeqs; seqIndex++) { in findQuery() 3336 for(seqIndex = 1; seqIndex < numSeqs; seqIndex++) { in posProcessAlignment() [all …]
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/dports/math/jts/jts-jts-1.18.1/modules/core/src/main/java/org/locationtech/jts/awt/ |
H A D | ShapeReader.java | 93 int seqIndex = 0; in read() local 94 while (seqIndex < pathPtSeq.size()) { in read() 97 Coordinate[] pts = (Coordinate[]) pathPtSeq.get(seqIndex); in read() 99 seqIndex++; in read() 103 while (seqIndex < pathPtSeq.size() && isHole((Coordinate[]) pathPtSeq.get(seqIndex))) { in read() 104 Coordinate[] holePts = (Coordinate[]) pathPtSeq.get(seqIndex); in read() 107 seqIndex++; in read()
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/dports/lang/mono/mono-5.10.1.57/mcs/class/referencesource/System.ServiceModel/System/ServiceModel/Dispatcher/ |
H A D | QuerySetOp.cs | 21 …for (int seqIndex = sequences.basePtr, ordinalIndex = ordinals.basePtr; seqIndex <= sequences.endP… in Eval() 23 NodeSequence sequence = sequenceBuffer[seqIndex].Sequence; in Eval() 98 …for (int seqIndex = sequences.basePtr, resultIndex = results.basePtr; seqIndex <= sequences.endPtr… in Eval() 100 NodeSequence sourceSequence = sequenceBuffer[seqIndex].Sequence; in Eval() 118 context.ReplaceSequenceAt(seqIndex, sequenceBuilder.Sequence); in Eval()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/ |
H A D | block_multiple_alignment.cpp | 291 int seqIndex; in GetCharacterTraitsAt() local 297 *character = (seqIndex >= 0) ? sequence->sequenceString[seqIndex] : '~'; in GetCharacterTraitsAt() 339 if (seqIndex >= 0) in GetCharacterTraitsAt() 355 if (showGeometryViolations && seqIndex >= 0 && geometryViolations[row][seqIndex]) { in GetCharacterTraitsAt() 552 if ((int)seqIndex >= range->from && (int)seqIndex <= range->to) { in GetBlock() 1767 if ((int)seqIndex >= range->from && (int)seqIndex <= range->to) { in GetAlignmentIndex() 1842 int seqIndex = -1; in GetIndexAt() local 1856 seqIndex = -1; in GetIndexAt() 1869 seqIndex = -1; in GetIndexAt() 1872 if (seqIndex < range->from || seqIndex > range->to) seqIndex = -1; in GetIndexAt() [all …]
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H A D | block_multiple_alignment.hpp | 88 bool IsAligned(unsigned int row, unsigned int seqIndex) const; 91 bool IsAligned(const Sequence *sequence, unsigned int seqIndex) const in IsAligned() 95 return IsAligned(row, seqIndex); in IsAligned() 116 const Vector * GetAlignmentColor(const Sequence *sequence, unsigned int seqIndex, 118 const Vector * GetAlignmentColor(unsigned int row, unsigned int seqIndex, 145 …int GetAlignmentIndex(unsigned int row, unsigned int seqIndex, eUnalignedJustification justificati… 273 const Block * GetBlock(unsigned int row, unsigned int seqIndex) const;
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/bma_refine/ |
H A D | BMAUtils.cpp | 74 if (seqIndex) { in BEGIN_SCOPE() 75 *seqIndex = (result) ? dummySeqIndex : BMA::eUndefined; in BEGIN_SCOPE() 88 unsigned int seqIndex; in GetCharacterForColumn() local 89 return GetCharacterAndIndexForColumn(bma, alignmentIndex, row, residue, &seqIndex); in GetCharacterForColumn() 177 unsigned int seqIndex = 0, alignmentIndex = 0; in MapAlignmentIndexToSeqIndex() local 201 aI2sI[alignmentIndex] = seqIndex; in MapAlignmentIndexToSeqIndex() 298 unsigned int seqIndex, masterSeqIndex, alphabetSize; in PrintPSSMForRow() local 368 oss << setw(4) << seqIndex+1 << " slave residue "; in PrintPSSMForRow() 447 unsigned int alphabetSize, blockIndex, seqIndex, masterSeqIndex, nRows, row; in PrintPSSMForColumn() local 492 if (row == 0) masterSeqIndex = seqIndex; in PrintPSSMForColumn() [all …]
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/io/ |
H A D | IndexFastaStream.java | 162 public void setContigByIndex(int seqIndex) in setContigByIndex() argument 168 len = getLengthByIndex(seqIndex); in setContigByIndex() 169 contig = getContigByIndex(seqIndex); in setContigByIndex() 212 private int getLengthByIndex(int seqIndex) in getLengthByIndex() argument 219 if(i == seqIndex) in getLengthByIndex() 233 private String getContigByIndex(int seqIndex) in getContigByIndex() argument 240 if(i == seqIndex) in getContigByIndex() 266 public ReferenceSequence getReferenceSequence(int seqIndex) in getReferenceSequence() argument 273 if(i == seqIndex) in getReferenceSequence()
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/dports/audio/mous/mous-2.0.1/sdk/util/ |
H A D | Playlist.h | 216 int seqIndex = (m_Mode == PlaylistMode::Shuffle in Move() local 220 const auto iter = std::find(oldPos.begin(), oldPos.end(), seqIndex); in Move() 222 seqIndex = realNewPos + (iter - oldPos.begin()); in Move() 224 int tmp = seqIndex; in Move() 226 if (oldPos[i] < seqIndex) in Move() 233 seqIndex = tmp; in Move() 236 assert(seqIndex >= 0 && (size_t)seqIndex < m_ItemQueue.size()); in Move() 240 MOUS_FIND(m_SeqShuffleQueue, seqIndex) - m_SeqShuffleQueue.begin() : seqIndex; in Move()
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/dports/biology/pbbam/pbbam-0.18.0/src/ |
H A D | IndexedFastaReader.cpp | 113 size_t seqIndex = 0; in ReferenceSubsequence() local 127 subseq.insert(seqIndex, opLength, '-'); in ReferenceSubsequence() 128 seqIndex += opLength; in ReferenceSubsequence() 138 subseq.insert(seqIndex, opLength, '-'); in ReferenceSubsequence() 141 subseq.insert(seqIndex, opLength, '*'); in ReferenceSubsequence() 145 seqIndex += opLength; in ReferenceSubsequence()
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/dports/lang/micropython/micropython-1.17/ports/mimxrt/hal/ |
H A D | flexspi_nor_flash.c | 59 flashXfer.seqIndex = NOR_CMD_LUT_SEQ_IDX_WRITEENABLE; in flexspi_nor_write_enable() 78 flashXfer.seqIndex = NOR_CMD_LUT_SEQ_IDX_READSTATUSREG; in flexspi_nor_wait_bus_busy() 124 flashXfer.seqIndex = NOR_CMD_LUT_SEQ_IDX_WRITESTATUSREG; in flexspi_nor_enable_quad_mode() 155 flashXfer.seqIndex = NOR_CMD_LUT_SEQ_IDX_ERASESECTOR; in flexspi_nor_flash_erase_sector() 186 flashXfer.seqIndex = NOR_CMD_LUT_SEQ_IDX_PAGEPROGRAM_QUAD; in flexspi_nor_flash_page_program() 210 flashXfer.seqIndex = NOR_CMD_LUT_SEQ_IDX_READID; in flexspi_nor_get_vendor_id()
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H A D | flexspi_hyper_flash.c | 69 flashXfer.seqIndex = HYPERFLASH_CMD_LUT_SEQ_IDX_READDATA; in flexspi_nor_hyperbus_read() 86 flashXfer.seqIndex = HYPERFLASH_CMD_LUT_SEQ_IDX_WRITEDATA; in flexspi_nor_hyperbus_write() 104 flashXfer.seqIndex = HYPERFLASH_CMD_LUT_SEQ_IDX_WRITEENABLE; in flexspi_nor_write_enable() 123 flashXfer.seqIndex = HYPERFLASH_CMD_LUT_SEQ_IDX_READSTATUS; in flexspi_nor_wait_bus_busy() 165 flashXfer.seqIndex = HYPERFLASH_CMD_LUT_SEQ_IDX_ERASESECTOR; in flexspi_nor_flash_erase_sector() 197 flashXfer.seqIndex = HYPERFLASH_CMD_LUT_SEQ_IDX_PAGEPROGRAM; in flexspi_nor_flash_page_program()
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/dports/biology/emboss/EMBOSS-6.6.0/jemboss/org/emboss/jemboss/editor/ |
H A D | SequenceReader.java | 286 Hashtable seqIndex = new Hashtable(); in readMSFFile() local 315 seqIndex.put(name,new Integer(num)); in readMSFFile() 330 if(!seqIndex.containsKey(name)) in readMSFFile() 339 int seqInd = ((Integer)seqIndex.get(name)).intValue(); in readMSFFile() 374 Hashtable seqIndex = new Hashtable(); in readClustalFile() local 389 if(!seqIndex.containsKey(name)) in readClustalFile() 391 seqIndex.put(name,new Integer(num)); in readClustalFile() 401 int seqInd = ((Integer)seqIndex.get(name)).intValue(); in readClustalFile()
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/dports/sysutils/siegfried/siegfried-1.9.1/vendor/github.com/richardlehane/match/fwac/ |
H A D | fwac.go | 153 seqIndex int // index within all the Seqs in the Wac member 465 …if o.subIndex == 0 || (precons[o.seqIndex][o.subIndex-1] != 0 && offset-int64(o.length) >= precons… 466 if precons[o.seqIndex][o.subIndex] == 0 { 467 precons[o.seqIndex][o.subIndex] = offset 469 …results <- Result{Index: [2]int{o.seqIndex, o.subIndex}, Offset: offset - int64(o.length), Length:… 513 …if o.subIndex == 0 || (precons[o.seqIndex][o.subIndex-1] != 0 && offset-int64(o.length) >= precons… 514 if precons[o.seqIndex][o.subIndex] == 0 { 515 precons[o.seqIndex][o.subIndex] = offset 517 …results <- Result{Index: [2]int{o.seqIndex, o.subIndex}, Offset: offset - int64(o.length), Length:…
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/cd_utils/ |
H A D | cuCdCore.cpp | 233 int count = 0, seqIndex = -1; in GetNumRowsWithSequences() local 237 if (seqIndex >= 0) { in GetNumRowsWithSequences() 320 int seqIndex = -1; in GetSeqIndexForRowIndex() local 324 return seqIndex; in GetSeqIndexForRowIndex() 330 return seqIndex; in GetSeqIndexForRowIndex() 684 if (seqIndex >= 0 && seqIndex < GetNumSequences() && IsSetSequences()) { in GetSeqEntryForIndex() 706 if (seqIndex >= 0 && seqIndex < GetNumSequences() && IsSetSequences()) { in GetBioseqForIndex() 1271 int seqIndex = -1; in GetRowsForMmdbId() local 1281 if (seqIndex > 0) { in GetRowsForMmdbId() 1296 int seqIndex = -1; in GetRowsWithMmdbId() local [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/struct_util/ |
H A D | su_block_multiple_alignment.cpp | 288 unsigned int seqIndex; in GetCharacterAt() local 294 *character = (seqIndex != eUndefined) ? sequence->m_sequenceString[seqIndex] : '~'; in GetCharacterAt() 332 const Block *block = GetBlock(row, seqIndex); in IsAligned() 349 if ((int)seqIndex >= range->from && (int)seqIndex <= range->to) in GetBlock() 362 if ((int)seqIndex >= range->from && (int)seqIndex <= range->to) { in GetBlock() 1324 if ((int)seqIndex >= range->from && (int)seqIndex <= range->to) { in GetAlignmentIndex() 1399 seqIndex = range->from + blockColumn; in GetIndexAt() 1417 seqIndex = range->from + blockColumn; in GetIndexAt() 1424 if ((int)seqIndex < range->from || (int)seqIndex > range->to) in GetIndexAt() 1425 seqIndex = BlockMultipleAlignment::eUndefined; in GetIndexAt() [all …]
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/dports/biology/jalview/jalview/src/jalview/gui/ |
H A D | SeqPanel.java | 104 final int seqIndex; field in SeqPanel.MousePos 116 seqIndex = seq; in MousePos() 133 boolean b = (column == o.column && seqIndex == o.seqIndex in equals() 268 int seqIndex = -1; in findMousePosition() local 301 seqIndex = alignmentHeight - 1; in findMousePosition() 320 seqIndex = Math.min(seqIndex, ranges.getEndSeq()); in findMousePosition() 828 int seq = pos.seqIndex; in mousePressed() 1269 String seqno = seqIndex == -1 ? "" : " " + (seqIndex + 1); in setStatusMessage() 2188 final int seq = pos.seqIndex; in doMousePressedDefineMode() 2298 final int seq = pos.seqIndex; in showPopupMenu() [all …]
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/dports/biology/jalview/jalview/src/jalview/renderer/ |
H A D | OverviewRenderer.java | 108 int seqIndex = 0; in draw() local 131 int endRow = Math.min(Math.round((seqIndex + 1) * pixelsPerSeq) - 1, in draw() 182 seqIndex++; in draw() 323 int seqIndex = 0; in buildHiddenImage() local 333 int endRow = Math.min(Math.round((seqIndex + 1) * pixelsPerSeq) - 1, in buildHiddenImage() 343 seqIndex++; in buildHiddenImage()
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