Searched refs:seqNameVector (Results 1 – 1 of 1) sorted by relevance
| /dports/biology/mothur/mothur-1.46.1/source/commands/ |
| H A D | shhhercommand.cpp | 357 vector<string> seqNameVector; in driver() local
370 …int numSeqs = getFlowData(flowFileName, seqNameVector, lengths, flowDataIntI, nameMap, numFlowCell… in driver()
391 …createNamesFile(numSeqs, numUniques, namesFileName, seqNameVector, mapSeqToUnique, mapUniqueToSeq); in driver()
801 duplicateNames[mapSeqToUnique[i]] += seqNameVector[i] + ','; in createNamesFile()
1413 qualityFile << '>' << seqNameVector[mapUniqueToSeq[i]] << endl; in writeQualities()
1446 fastaFile << '>' << seqNameVector[aaI[i][0]] << endl; in writeSequences()
1489 nameFile << seqNameVector[aaI[i][0]] << '\t' << seqNameVector[aaI[i][0]]; in writeNames()
1492 nameFile << ',' << seqNameVector[aaI[i][j]]; in writeNames()
1514 …nd::writeGroups(string groupFileName, string fileRoot, int numSeqs, vector<string>& seqNameVector){ in writeGroups() argument
1521 groupFile << seqNameVector[i] << '\t' << fileRoot << endl; in writeGroups()
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