| /dports/biology/flash/FLASH-1.2.11/ |
| H A D | combine_reads.c | 92 const char * restrict seq_2, in compute_mismatch_stats() argument
110 if (seq_1[i] != seq_2[i]) { in compute_mismatch_stats()
195 seq_1 += 16, seq_2 += 16; in compute_mismatch_stats()
213 const char *_seq_2 = seq_2 - veclen; in compute_mismatch_stats()
232 if (seq_1[i] != seq_2[i]) { in compute_mismatch_stats()
367 if (*seq_1 == *seq_2) { in generate_combined_read()
403 *combined_seq = *seq_2; in generate_combined_read()
409 if (*seq_2 == 'N') in generate_combined_read()
412 *combined_seq = *seq_2; in generate_combined_read()
418 seq_2++; in generate_combined_read()
[all …]
|
| /dports/biology/p5-TrimGalore/TrimGalore-0.6.5/ |
| H A D | trim_galore | 1684 my $seq_2 = <IN2>;
1688 if ($id_1 and $seq_1 and $l3_1 and $qual_1 and $id_2 and $seq_2 and $l3_2 and $qual_2){
1699 last unless ($id_2 and $seq_2 and $l3_2 and $qual_2);
1714 chomp $seq_2;
1726 …$seq_2 = substr($seq_2,$clip_r2); # starting after the sequences to be trimmed until the end of th…
1739 …$seq_2 = substr($seq_2,0,(length($seq_2) - $three_prime_clip_r2)); # starting after the sequences …
1756 $n_count = Ncounter($seq_2);
1766 if ( (length($seq_1) < $length_cutoff) or (length($seq_2) < $length_cutoff) ){
1778 if ( length($seq_2) >= $length_read_2){ # read 2 is long enough
1780 print UNPAIRED2 "$seq_2\n";
[all …]
|
| /dports/www/mediawiki136/mediawiki-1.36.3/vendor/wikimedia/parsoid/src/Wt2Html/ |
| H A D | Grammar.php | 2676 seq_2:
2991 seq_2:
3127 seq_2:
3375 seq_2:
3537 seq_2:
3863 seq_2:
4039 seq_2:
4574 seq_2:
5091 seq_2:
5686 seq_2:
[all …]
|
| /dports/www/mediawiki137/mediawiki-1.37.1/vendor/wikimedia/parsoid/src/Wt2Html/ |
| H A D | Grammar.php | 2720 seq_2:
3035 seq_2:
3171 seq_2:
3419 seq_2:
3581 seq_2:
3907 seq_2:
4083 seq_2:
4618 seq_2:
5135 seq_2:
5742 seq_2:
[all …]
|
| /dports/www/mediawiki135/mediawiki-1.35.5/vendor/wikimedia/parsoid/src/Wt2Html/ |
| H A D | Grammar.php | 2623 seq_2:
2938 seq_2:
3074 seq_2:
3332 seq_2:
3494 seq_2:
3820 seq_2:
3996 seq_2:
4531 seq_2:
5048 seq_2:
5643 seq_2:
[all …]
|
| /dports/www/mediawiki136/mediawiki-1.36.3/vendor/wikimedia/shellbox/src/ShellParser/ |
| H A D | PEGParser.php | 802 seq_2:
920 seq_2:
1652 seq_2:
2225 seq_2:
2299 seq_2:
3358 seq_2:
3555 seq_2:
4177 seq_2:
4588 seq_2:
4672 seq_2:
[all …]
|
| /dports/www/mediawiki137/mediawiki-1.37.1/vendor/wikimedia/shellbox/src/ShellParser/ |
| H A D | PEGParser.php | 802 seq_2:
920 seq_2:
1652 seq_2:
2225 seq_2:
2299 seq_2:
3358 seq_2:
3555 seq_2:
4177 seq_2:
4588 seq_2:
4672 seq_2:
[all …]
|
| /dports/databases/pg_citus/citus-10.2.3/src/test/regress/expected/ |
| H A D | multi_sequence_default.out | 303 CREATE SEQUENCE seq_2;
304 CREATE TABLE seq_test_2 (x int, y bigint DEFAULT nextval('seq_2'));
313 CREATE TABLE seq_test_2 (x int, y int DEFAULT nextval('seq_2'));
321 CREATE TABLE seq_test_2_0(x int, y smallint DEFAULT nextval('seq_2'));
324 ERROR: The sequence sequence_default.seq_2 is already used for a different type in column 2 of the…
330 CREATE TABLE seq_test_2 (x int, y bigint DEFAULT nextval('seq_2'));
338 CREATE TABLE seq_test_2 (x int, y int DEFAULT nextval('seq_2'), z bigint DEFAULT nextval('seq_2'));
345 ALTER SEQUENCE seq_2 RENAME TO sequence_2;
364 ALTER TABLE sequence_2 RENAME TO seq_2;
367 \d sequence_default.seq_2
[all …]
|
| /dports/databases/pg_citus/citus-10.2.3/src/test/regress/sql/ |
| H A D | multi_sequence_default.sql | 157 CREATE SEQUENCE seq_2;
182 ALTER SEQUENCE seq_2 RENAME TO sequence_2;
191 ALTER TABLE sequence_2 RENAME TO seq_2;
194 \d sequence_default.seq_2
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/dbindex_search/ |
| H A D | sr_search.hpp | 57 const CSeqVector * seq_2; member
69 : seq_1( &seq ), seq_2( 0 ), num_res( nr ), in SSearchData()
81 : seq_1( &seq1 ), seq_2( &seq2 ), in SSearchData()
|
| /dports/textproc/py-python-docx/python-docx-0.8.11/tests/unitutil/ |
| H A D | cxml.py | 146 def merge(seq, seq_2): argument
147 for item in seq_2:
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/manual/source/Tutorial/InputOutput/ |
| H A D | sequences.fasta | 33 >seq_2
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/journaled_set/ |
| H A D | sequences.fasta | 33 >seq_2
|
| /dports/databases/mariadb105-client/mariadb-10.5.15/mysql-test/suite/binlog/t/ |
| H A D | binlog_empty_xa_prepared.test | 29 CREATE TEMPORARY SEQUENCE seq_2;
|
| /dports/databases/mariadb105-server/mariadb-10.5.15/mysql-test/suite/binlog/t/ |
| H A D | binlog_empty_xa_prepared.test | 29 CREATE TEMPORARY SEQUENCE seq_2;
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/asnval/TestRes.asnval/tests/test1/test-cases/ |
| H A D | reject-sqn.golden | 11 ERROR: valid [SEQ_INST.MolNuclAcid] Bioseq.mol is type na BIOSEQ: lcl|seq_2: raw, na len= 336
12 … /environmental_sample DESCRIPTOR: BioSrc: Uncultured bacterium BIOSEQ: lcl|seq_2: raw, na len= 336
13 ERROR: valid [SEQ_DESCR.NoMolInfoFound] No Mol-info applies to this Bioseq BIOSEQ: lcl|seq_2: raw, …
14 …enetic code [1] or protein should be partial FEATURE: CDS: [lcl|seq_2:1-336] [lcl|seq_2: raw, na …
15 ERROR: valid [SEQ_FEAT.NoStop] Missing stop codon FEATURE: CDS: [lcl|seq_2:1-336] [lcl|seq_2: raw,…
16 … between CDS (code 1) and BioSource (code 0) FEATURE: CDS: [lcl|seq_2:1-336] [lcl|seq_2: raw, na …
17 …me product Bioseq from multiple CDS features FEATURE: CDS: [lcl|seq_2:1-336] [lcl|seq_2: raw, na …
|
| /dports/www/mediawiki135/mediawiki-1.35.5/vendor/wikimedia/parsoid/tests/ParserTests/ |
| H A D | Grammar.php | 1483 goto seq_2;
1494 goto seq_2;
1497 seq_2:
1620 goto seq_2;
1630 goto seq_2;
1633 seq_2:
|
| /dports/biology/ncbi-toolkit/ncbi/network/wwwblast/Src/ |
| H A D | wblast2.c | 1611 …s_prot, Int2 mtrx, Int2 ma, Int2 ms, BLAST_OptionsBlkPtr options, CharPtr seq_2, CharPtr seq_1, Ch… in PrintParam() argument
1703 if (seq_2 != NULL && *seq_2 != NULLB) { in PrintParam()
1705 for (s = seq_2; *s != '\0'; s++) { in PrintParam()
2082 CharPtr seq_1=NULL, seq_2=NULL, chptr; in Main() local
2366 seq_2 = seq2EntryData; in Main()
2410 if (seq_2 != NULL) { in Main()
2411 subject_sep = FastaToSeqBuff(seq_2, &sq_2, !is_aa2); in Main()
2413 is_na2 = FastaCheckDna(seq_2); in Main()
|
| /dports/www/mediawiki136/mediawiki-1.36.3/vendor/wikimedia/parsoid/src/ParserTests/ |
| H A D | Grammar.php | 1607 goto seq_2;
1618 goto seq_2;
1621 seq_2:
1743 goto seq_2;
1754 goto seq_2;
1757 seq_2:
|
| /dports/www/mediawiki137/mediawiki-1.37.1/vendor/wikimedia/parsoid/src/ParserTests/ |
| H A D | Grammar.php | 1611 goto seq_2;
1622 goto seq_2;
1625 seq_2:
1747 goto seq_2;
1758 goto seq_2;
1761 seq_2:
|
| /dports/lang/erlang-runtime23/otp-OTP-23.3.4.10/erts/emulator/beam/ |
| H A D | erl_bif_op.c | 110 BIF_RETTYPE seq_2(BIF_ALIST_2) in seq_2() function
|
| /dports/lang/erlang-runtime24/otp-OTP-24.1.7/erts/emulator/beam/ |
| H A D | erl_bif_op.c | 110 BIF_RETTYPE seq_2(BIF_ALIST_2) in seq_2() function
|
| /dports/lang/erlang-runtime22/otp-OTP-22.3.4.24/erts/emulator/beam/ |
| H A D | erl_bif_op.c | 110 BIF_RETTYPE seq_2(BIF_ALIST_2) in seq_2() function
|
| /dports/lang/erlang-wx/otp-OTP-24.1.7/erts/emulator/beam/ |
| H A D | erl_bif_op.c | 110 BIF_RETTYPE seq_2(BIF_ALIST_2) in seq_2() function
|
| /dports/lang/erlang-java/otp-OTP-24.1.7/erts/emulator/beam/ |
| H A D | erl_bif_op.c | 110 BIF_RETTYPE seq_2(BIF_ALIST_2) in seq_2() function
|