| /dports/biology/abyss/abyss-2.3.1/Align/ |
| H A D | smith_waterman.cpp | 97 const string& seq_a, const string& seq_b, SMAlignment& align, unsigned* align_pos) in Backtrack() argument
112 consensus_a += seq_a[current_i-1]; // match/mismatch in A in Backtrack()
115 match += tolower(seq_a[current_i-1]); in Backtrack()
120 if (isMatch(seq_a[current_i-1], seq_b[current_j-1], in Backtrack()
127 seq_a[current_i-1], seq_b[current_j-1]); in Backtrack()
143 consensus_a += seq_a[current_i-1]; in Backtrack()
146 if (isMatch(seq_a[current_i-1], seq_b[current_j-1], in Backtrack()
152 match += ambiguityOr(seq_a[current_i-1], seq_b[current_j-1]); in Backtrack()
183 int N_a = seq_a.length(); in alignOverlap()
214 char a = seq_a[i-1], b = seq_b[j-1]; in alignOverlap()
[all …]
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| H A D | smith_waterman.h | 56 void alignOverlap(const string& seq_a, const string& seq_b,
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| /dports/cad/py-pymtl/pymtl3-3.1.6/pymtl3/passes/backends/verilog/test/ |
| H A D | TranslationImport_dynlib_close_test.py | 60 seq_a = Seq.A()
66 seq_a._tvs = [
73 seq_a._tv_in, seq_a._tv_out = tv_in, tv_out
74 run_test( seq_a )
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| /dports/www/trac-devel/Trac-1.5.3/trac/search/tests/ |
| H A D | functional.py | 37 seq_a = [True, False, True, False]
38 setfilters(seq_a)
43 checkfilters(seq_a)
46 checkfilters(seq_a)
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| /dports/biology/exonerate/exonerate-2.4.0/src/util/ |
| H A D | fastadiff.c | 65 register gchar *seq_a, *seq_b; in fasta_diff() local
106 seq_a = Sequence_get_str(fdbs_a->seq); in fasta_diff()
108 if(comp(seq_a, seq_b)){ in fasta_diff()
114 g_free(seq_a); in fasta_diff()
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| H A D | fastanrdb.c | 145 register gchar *seq_a, *seq_b; in NRDB_Data_merge_and_print() local
166 seq_a = Sequence_get_str(fdbs_a->seq); in NRDB_Data_merge_and_print()
168 if(!ni->comp(seq_a, seq_b)){ in NRDB_Data_merge_and_print()
173 g_free(seq_a); in NRDB_Data_merge_and_print()
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| H A D | fastasort.c | 100 register gchar *seq_a, *seq_b; in FastaSort_compare_seq_forward() local
104 seq_a = Sequence_get_str(fdbs_a->seq); in FastaSort_compare_seq_forward()
108 ret_val = strcmp(seq_a, seq_b); in FastaSort_compare_seq_forward()
109 g_free(seq_a); in FastaSort_compare_seq_forward()
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| /dports/www/py-django-cms/django-cms-3.7.1/cms/tests/ |
| H A D | test_wizards.py | 55 def assertSequencesEqual(self, seq_a, seq_b): argument
56 seq_a = list(seq_a)
58 zipped = list(zip(seq_a, seq_b))
59 if len(zipped) < len(seq_a) or len(zipped) < len(seq_b):
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| /dports/biology/exonerate/exonerate-2.4.0/src/comparison/ |
| H A D | wordhood.c | 24 gchar *seq_a, gchar *seq_b){ in WordHood_Submat_score_func() argument
25 return Submat_lookup(wha->submat, *seq_a, *seq_b); in WordHood_Submat_score_func()
91 gchar *seq_a, gchar *seq_b){ in WordHood_CodonSubmat_score_func() argument
99 return CodonSubmat_lookup(wha->codon_submat, (guchar*)seq_a, in WordHood_CodonSubmat_score_func()
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| H A D | wordhood.h | 44 gchar *seq_a, gchar *seq_b);
|
| /dports/net/pjsip/pjproject-2.11.1/pjmedia/src/pjmedia/ |
| H A D | rtcp_xr.c | 632 pj_uint32_t extended_seq, seq_a, seq_b, diff_a, diff_b; in extend_seq() local
647 seq_a = seq | (sess->src_ref_seq & 0xFFFF0000u); in extend_seq()
648 if(sess->src_ref_seq < seq_a) { in extend_seq()
649 seq_b = seq_a - 0x00010000u; in extend_seq()
650 diff_a = seq_a - sess->src_ref_seq; in extend_seq()
653 seq_b = seq_a + 0x00010000u; in extend_seq()
654 diff_a = sess->src_ref_seq - seq_a; in extend_seq()
663 extended_seq = seq_a; in extend_seq()
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| /dports/science/py-cirq-pasqal/Cirq-0.13.1/cirq-core/cirq/ops/ |
| H A D | boolean_hamiltonian_test.py | 145 def test_gray_code_comparison(seq_a, seq_b, expected): argument
146 assert bh._gray_code_comparator(seq_a, seq_b) == expected
|
| /dports/science/py-cirq-google/Cirq-0.13.0/cirq-core/cirq/ops/ |
| H A D | boolean_hamiltonian_test.py | 145 def test_gray_code_comparison(seq_a, seq_b, expected): argument
146 assert bh._gray_code_comparator(seq_a, seq_b) == expected
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| /dports/science/py-cirq-ionq/Cirq-0.13.1/cirq-core/cirq/ops/ |
| H A D | boolean_hamiltonian_test.py | 145 def test_gray_code_comparison(seq_a, seq_b, expected): argument
146 assert bh._gray_code_comparator(seq_a, seq_b) == expected
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| /dports/science/py-cirq-core/Cirq-0.13.1/cirq-core/cirq/ops/ |
| H A D | boolean_hamiltonian_test.py | 145 def test_gray_code_comparison(seq_a, seq_b, expected): argument
146 assert bh._gray_code_comparator(seq_a, seq_b) == expected
|
| /dports/biology/py-biopython/biopython-1.79/Tests/ |
| H A D | search_tests_common.py | 43 for seq_a, seq_b in zip(val_a, val_b):
45 self.assertEqual(str(seq_a.seq), str(seq_b.seq), msg=msg)
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| /dports/biology/exonerate/exonerate-2.4.0/src/database/ |
| H A D | dataset.c | 171 register Dataset_Sequence **seq_a = (Dataset_Sequence**)a, in Dataset_Sequence_compare_by_id_uniq() local
173 register gint retval = strcmp((*seq_a)->id, (*seq_b)->id); in Dataset_Sequence_compare_by_id_uniq()
176 (*seq_a)->id); in Dataset_Sequence_compare_by_id_uniq()
182 register Dataset_Sequence **seq_a = (Dataset_Sequence**)a, in Dataset_Sequence_compare_by_id() local
184 register gint retval = strcmp((*seq_a)->id, (*seq_b)->id); in Dataset_Sequence_compare_by_id()
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| /dports/graphics/blender/blender-2.91.0/source/blender/sequencer/intern/ |
| H A D | sequencer.c | 1207 const Sequence *seq_a = a; in BKE_sequencer_cmp_time_startdisp() local
5038 char name[sizeof(seq_a->name)]; in BKE_sequence_swap()
5040 if (seq_a->len != seq_b->len) { in BKE_sequence_swap()
5046 if (seq_a->type != seq_b->type) { in BKE_sequence_swap()
5067 SWAP(Sequence, *seq_a, *seq_b); in BKE_sequence_swap()
5078 SWAP(Sequence *, seq_a->prev, seq_b->prev); in BKE_sequence_swap()
5079 SWAP(Sequence *, seq_a->next, seq_b->next); in BKE_sequence_swap()
5080 SWAP(int, seq_a->start, seq_b->start); in BKE_sequence_swap()
5082 SWAP(int, seq_a->endofs, seq_b->endofs); in BKE_sequence_swap()
5085 SWAP(int, seq_a->machine, seq_b->machine); in BKE_sequence_swap()
[all …]
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| /dports/devel/glib20/glib-2.70.4/glib/ |
| H A D | gsequence.c | 425 GSequence *seq_a, *seq_b; in g_sequence_iter_compare() local
430 seq_a = get_sequence (a); in g_sequence_iter_compare()
432 g_return_val_if_fail (seq_a == seq_b, 0); in g_sequence_iter_compare()
434 check_seq_access (seq_a); in g_sequence_iter_compare()
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| /dports/devel/wasi-libcxx/llvm-project-13.0.1.src/lldb/source/Symbol/ |
| H A D | LineTable.cpp | 172 auto *seq_a = static_cast<const LineSequenceImpl *>(sequence_a.get()); in operator ()() local
174 return (*this)(seq_a->m_entries.front(), seq_b->m_entries.front()); in operator ()()
|
| /dports/lang/rust/rustc-1.58.1-src/src/llvm-project/lldb/source/Symbol/ |
| H A D | LineTable.cpp | 172 auto *seq_a = static_cast<const LineSequenceImpl *>(sequence_a.get()); in operator ()() local
174 return (*this)(seq_a->m_entries.front(), seq_b->m_entries.front()); in operator ()()
|
| /dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/lldb/source/Symbol/ |
| H A D | LineTable.cpp | 172 auto *seq_a = static_cast<const LineSequenceImpl *>(sequence_a.get()); in operator ()() local
174 return (*this)(seq_a->m_entries.front(), seq_b->m_entries.front()); in operator ()()
|
| /dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/lldb/source/Symbol/ |
| H A D | LineTable.cpp | 172 auto *seq_a = static_cast<const LineSequenceImpl *>(sequence_a.get()); in operator ()() local
174 return (*this)(seq_a->m_entries.front(), seq_b->m_entries.front()); in operator ()()
|
| /dports/devel/llvm13/llvm-project-13.0.1.src/lldb/source/Symbol/ |
| H A D | LineTable.cpp | 172 auto *seq_a = static_cast<const LineSequenceImpl *>(sequence_a.get()); in operator ()() local
174 return (*this)(seq_a->m_entries.front(), seq_b->m_entries.front()); in operator ()()
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| /dports/biology/fasta3/fasta-36.3.8/src/ |
| H A D | ncbl2_mlib.c | 1147 struct seq_record *seq_a, *seq_p; in ncbl2_get_mmap_chain_o() local
1155 seq_a = cur_seqr_chain->seqr_base; in ncbl2_get_mmap_chain_o()
1162 seq_p = &seq_a[i]; in ncbl2_get_mmap_chain_o()
1221 struct seq_record *seq_a, *seq_p; in ncbl2_get_mmap_chain() local
1226 seq_a = cur_seqr_chain->seqr_base; in ncbl2_get_mmap_chain()
1231 seq_p = &seq_a[i]; in ncbl2_get_mmap_chain()
|