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Searched refs:seq_strand (Results 1 – 6 of 6) sorted by relevance

/dports/devel/p5-Data-Stag/Data-Stag-0.14/t/
H A Dbio.x23 [seq_strand=>+1],
31 [seq_strand=>+1],
39 [seq_strand=>+1],
46 [seq_strand=>+1],
169 [seq_strand=>+1],
179 [seq_strand=>+1],
185 [seq_strand=>+1],
191 [seq_strand=>+1],
202 [seq_strand=>+1],
208 [seq_strand=>+1],
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dgnomon_seq.cpp171 bool Partial5pCodonIsStop(const CEResidueVec& seq_strand, int start, int frame) { in Partial5pCodonIsStop() argument
176 if(codon_start >= 0 && IsStopCodon(&seq_strand[codon_start])) in Partial5pCodonIsStop()
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SearchIO/
H A Dinfernal.pm423 $seq_start, $seq_stop, $seq_strand, $seq_cov,
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dsalsap.c1704 Uint1 seq_strand; in LocalAlignToSeqAnnotDimn() local
1870 seq_strand = Seq_strand_unknown; in LocalAlignToSeqAnnotDimn()
1872 seq_strand = strandp[k]; in LocalAlignToSeqAnnotDimn()
1873 if (seq_strand==Seq_strand_minus) { in LocalAlignToSeqAnnotDimn()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/
H A Dshowalign.cpp720 ENa_strand seq_strand, in s_FillCdsStartPosition() argument
772 if(seq_strand == eNa_strand_plus){ in s_FillCdsStartPosition()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/
H A Dshowalign.cpp720 ENa_strand seq_strand, in s_FillCdsStartPosition() argument
772 if(seq_strand == eNa_strand_plus){ in s_FillCdsStartPosition()