Searched refs:seqarray (Results 1 – 9 of 9) sorted by relevance
/dports/biology/p5-BioPerl/BioPerl-1.7.7/bin/ |
H A D | bp_gccalc | 67 my @seqarray = split('',$seq); 69 foreach my $base (@seqarray) { 73 my $len = $#seqarray+1;
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Align/ |
H A D | DNAStatistics.pm | 1382 my @seqarray = @$seq_ref; 1386 for (my $i = 0; $i < scalar @seqarray; $i++) { 1387 for (my $j = $i +1; $j<scalar @seqarray; $j++ ){ 1389 if (length($seqarray[$i]{'seq'}) != length($seqarray[$j]{'seq'})) { 1394 my $syn_site_count = count_syn_sites($seqarray[$i]{'seq'}, $synsites); 1395 my $syn_site_count2 = count_syn_sites($seqarray[$j]{'seq'}, $synsites); 1397 …my ($syn_count, $non_syn_count, $gap_cnt) = analyse_mutations($seqarray[$i]{'seq'}, $seqarray[$j]{… 1422 my $d_nc_var = jk_var($nc_prop, length ($seqarray[$i]{'seq'}) - $gap_cnt); 1435 Seq1 => $seqarray[$i]{'id'}, 1436 Seq2 => $seqarray[$j]{'id'}, [all …]
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/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/PerlLib/ |
H A D | PWM.pm | 273 my @seqarray = split(//, $target_sequence); 286 my $char = $seqarray[$i]; 348 my @seqarray = split(//, $target_sequence); 362 my $char = $seqarray[$i];
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/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/PWM/ |
H A D | build_atgPWM_+-.pl | 172 my @seqarray = split(//, $sequence); 183 my $feature_seq = &get_feature_seq(\@seqarray, $start_pos);
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/dports/biology/jalview/jalview/src/jalview/ws/jws1/ |
H A D | SeqSearchWSThread.java | 110 vamsas.objects.simple.Sequence[] seqarray = (valid) in prepareInput() local 126 seqarray[n] = new vamsas.objects.simple.Sequence(); in prepareInput() 127 seqarray[n].setId(newname); in prepareInput() 128 seqarray[n++].setSeq((submitGaps) ? seqs[i].getSequenceAsString() in prepareInput() 149 this.seqs.setSeqs(seqarray); in prepareInput()
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H A D | MsaWSThread.java | 110 vamsas.objects.simple.Sequence[] seqarray = (valid) in prepareInput() local 124 seqarray[n] = new vamsas.objects.simple.Sequence(); in prepareInput() 125 seqarray[n].setId(newname); in prepareInput() 126 seqarray[n++].setSeq((submitGaps) ? seqs[i].getSequenceAsString() in prepareInput() 143 this.seqs.setSeqs(seqarray); in prepareInput()
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/dports/math/py-pynleq2/pysces-0.9.8/pysces/ |
H A D | PyscesParScan.py | 289 def Analyze(partition,seqarray,GenOrder,mode,UserOutputList,mod): argument 310 invalid_state_list_idx.append(seqarray[i])
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/dports/biology/py-PySCeS/pysces-1.0.0/pysces/ |
H A D | PyscesParScan.py | 332 def Analyze(partition, seqarray, GenOrder, mode, UserOutputList, mod): argument 353 invalid_state_list_idx.append(seqarray[i])
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/dports/graphics/blender/blender-2.91.0/source/blender/sequencer/intern/ |
H A D | sequencer.c | 702 Sequence ***seqarray, in seq_array() argument 708 *seqarray = NULL; in seq_array() 726 *seqarray = array = MEM_mallocN(sizeof(Sequence *) * (*tot), "SeqArray"); in seq_array()
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