/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_writer/unit_test/data/ |
H A D | redundant_deflines.asn | 4 seqid { 25 seqid { 38 seqid { 51 seqid { 64 seqid { 77 seqid { 90 seqid { 103 seqid { 116 seqid { 129 seqid { [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_writer/unit_test/data/ |
H A D | redundant_deflines.asn | 4 seqid { 25 seqid { 38 seqid { 51 seqid { 64 seqid { 77 seqid { 90 seqid { 103 seqid { 116 seqid { 129 seqid { [all …]
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/dports/biology/p5-Bio-Graphics/Bio-Graphics-2.40/lib/Bio/Graphics/Wiggle/ |
H A D | Loader.pm | 258 for my $seqid (@seqid) { 259 $seqid or next; 264 $seqids->{$seqid}{start}, 265 $seqids->{$seqid}{end}, 272 push @lines,"$track $seqid.data $seqids->{$seqid}{start}..$seqids->{$seqid}{end} $attributes"; 430 $seqids->{$seqid}{min} = $stats{$seqid}->min(); 431 $seqids->{$seqid}{max} = $stats{$seqid}->max(); 432 $seqids->{$seqid}{mean} = $stats{$seqid}->mean(); 433 $seqids->{$seqid}{stdev} = $stats{$seqid}->standard_deviation(); 609 my $seqid = shift; [all …]
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Location/ |
H A D | Split.pm | 116 $seqid && $self->seq_id($seqid); 180 my $seqid = $self->seq_id(); 190 my @locs = ($seqid ? 216 if($seqid) { 291 $seqid = $loc->seq_id() if(! $seqid); 572 my $seqid = $self->seq_id; 578 my @same_id_locs = ($seqid ? grep { $_->seq_id eq $seqid } @locs 619 my $seqid = $self->seq_id; 625 my @same_id_locs = ($seqid ? grep { $_->seq_id eq $seqid } @locs 667 my $seqid = $self->seq_id; [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_writer/ |
H A D | multisource_util.cpp | 85 CRef<CSeq_id> seqid; in AccessionToKey() local 90 if (CheckAccession(acc, gi, seqid, specific)) { in AccessionToKey() 91 if (seqid.Empty()) { in AccessionToKey() 96 GetSeqIdKey(*seqid, str); in AccessionToKey() 101 GetSeqIdKey(*seqid, str); in AccessionToKey() 110 CRef<objects::CSeq_id> & seqid, in CheckAccession() argument 115 seqid.Reset(); in CheckAccession() 134 seqid.Reset(new CSeq_id(acc)); in CheckAccession() 140 if (seqid->IsGi()) { in CheckAccession() 141 gi = seqid->GetGi(); in CheckAccession() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_writer/ |
H A D | multisource_util.cpp | 85 CRef<CSeq_id> seqid; in AccessionToKey() local 90 if (CheckAccession(acc, gi, seqid, specific)) { in AccessionToKey() 91 if (seqid.Empty()) { in AccessionToKey() 96 GetSeqIdKey(*seqid, str); in AccessionToKey() 101 GetSeqIdKey(*seqid, str); in AccessionToKey() 110 CRef<objects::CSeq_id> & seqid, in CheckAccession() argument 115 seqid.Reset(); in CheckAccession() 134 seqid.Reset(new CSeq_id(acc)); in CheckAccession() 140 if (seqid->IsGi()) { in CheckAccession() 141 gi = seqid->GetGi(); in CheckAccession() [all …]
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/dports/security/keybase/client-v5.7.1/go/vendor/github.com/keybase/go-framed-msgpack-rpc/rpc/ |
H A D | call.go | 15 seqid SeqNumber member 27 seqid SeqNumber member 33 seqid: 0, 51 seqid: cc.nextSeqid(), 60 ret := cc.seqid 61 cc.seqid++ 69 cc.calls[c.seqid] = c 72 func (cc *callContainer) RetrieveCall(seqid SeqNumber) *call { 76 return cc.calls[seqid] 79 func (cc *callContainer) RemoveCall(seqid SeqNumber) { [all …]
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/dports/biology/vcflib/vcflib-1.0.2/src/ |
H A D | smoother.cpp | 30 int seqid; member 138 if(seqid != sline[opt.seqid]){ in processSeqid() 299 opt.seqid = 0; in main() 304 opt.seqid = 0; in main() 309 opt.seqid = 0; in main() 314 opt.seqid = 0; in main() 319 opt.seqid = 0; in main() 324 opt.seqid = 0; in main() 329 opt.seqid = 0; in main() 334 opt.seqid = 0; in main() [all …]
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/dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/ |
H A D | smoother.cpp | 21 int seqid; member 127 if(seqid != sline[opt.seqid]){ in processSeqid() 288 opt.seqid = 0; in main() 293 opt.seqid = 0; in main() 298 opt.seqid = 0; in main() 303 opt.seqid = 0; in main() 308 opt.seqid = 0; in main() 313 opt.seqid = 0; in main() 318 opt.seqid = 0; in main() 323 opt.seqid = 0; in main() [all …]
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/dports/biology/freebayes/freebayes-1.3.5/vcflib/src/ |
H A D | smoother.cpp | 21 int seqid; member 127 if(seqid != sline[opt.seqid]){ in processSeqid() 288 opt.seqid = 0; in main() 293 opt.seqid = 0; in main() 298 opt.seqid = 0; in main() 303 opt.seqid = 0; in main() 308 opt.seqid = 0; in main() 313 opt.seqid = 0; in main() 318 opt.seqid = 0; in main() 323 opt.seqid = 0; in main() [all …]
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/dports/biology/py-ete3/ete3-3.1.2/ete3/phylomedb/ |
H A D | phylomeDB.py | 235 def get_id_translations(self, seqid): argument 454 (seqid[:3],int(seqid[3:])) 461 trees = {seqid:{}} 463 %(self._trees_table, seqid[:3], seqid[3:]) 481 trees = {seqid:{}} 483 %(self._trees_table, seqid[:3], seqid[3:]) 505 trees = {seqid:{}} 507 %(self._trees_table, seqid[:3], seqid[3:], phylomeid) 645 if type(seqid) == str: 646 seqid = [seqid] [all …]
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/dports/net/storj/storj-1.45.3/vendor/github.com/apache/thrift/lib/go/thrift/ |
H A D | multiplexed_protocol.go | 71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err… 73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid) 75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid) 132 name, typeId, seqid, err := in.ReadMessageBegin() 143 smb := NewStoredMessageProtocol(in, name, typeId, seqid) 152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid) 161 seqid int32 member 164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s… 165 return &storedMessageProtocol{protocol, name, typeId, seqid} 168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, … [all …]
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/dports/net/concourse-fly/concourse-6.7.1/vendor/github.com/apache/thrift/lib/go/thrift/ |
H A D | multiplexed_protocol.go | 71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err… 73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid) 75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid) 132 name, typeId, seqid, err := in.ReadMessageBegin() 143 smb := NewStoredMessageProtocol(in, name, typeId, seqid) 152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid) 161 seqid int32 member 164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s… 165 return &storedMessageProtocol{protocol, name, typeId, seqid} 168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, … [all …]
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/dports/games/automuteus/automuteus-6.15.2/vendor/go.opentelemetry.io/otel/exporters/trace/jaeger/internal/third_party/thrift/lib/go/thrift/ |
H A D | multiplexed_protocol.go | 71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err… 73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid) 75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid) 132 name, typeId, seqid, err := in.ReadMessageBegin() 143 smb := NewStoredMessageProtocol(in, name, typeId, seqid) 152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid) 161 seqid int32 member 164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s… 165 return &storedMessageProtocol{protocol, name, typeId, seqid} 168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, … [all …]
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/dports/www/fabio/fabio-1.5.14/vendor/github.com/apache/thrift/thrift-da1169d75b15/lib/go/thrift/ |
H A D | multiplexed_protocol.go | 71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err… 73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid) 75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid) 132 name, typeId, seqid, err := in.ReadMessageBegin() 143 smb := NewStoredMessageProtocol(in, name, typeId, seqid) 152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid) 161 seqid int32 member 164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s… 165 return &storedMessageProtocol{protocol, name, typeId, seqid} 168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, … [all …]
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/dports/www/fabio/fabio-1.5.14/vendor/github.com/apache/thrift/lib/go/thrift/ |
H A D | multiplexed_protocol.go | 71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err… 73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid) 75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid) 132 name, typeId, seqid, err := in.ReadMessageBegin() 143 smb := NewStoredMessageProtocol(in, name, typeId, seqid) 152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid) 161 seqid int32 member 164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s… 165 return &storedMessageProtocol{protocol, name, typeId, seqid} 168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, … [all …]
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/dports/misc/concourse/concourse-6.7.2/vendor/github.com/apache/thrift/lib/go/thrift/ |
H A D | multiplexed_protocol.go | 71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err… 73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid) 75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid) 132 name, typeId, seqid, err := in.ReadMessageBegin() 143 smb := NewStoredMessageProtocol(in, name, typeId, seqid) 152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid) 161 seqid int32 member 164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s… 165 return &storedMessageProtocol{protocol, name, typeId, seqid} 168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, … [all …]
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/dports/net/storj/storj-1.45.3/vendor/go.opentelemetry.io/otel/exporters/trace/jaeger/internal/third_party/thrift/lib/go/thrift/ |
H A D | multiplexed_protocol.go | 71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err… 73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid) 75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid) 132 name, typeId, seqid, err := in.ReadMessageBegin() 143 smb := NewStoredMessageProtocol(in, name, typeId, seqid) 152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid) 161 seqid int32 member 164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s… 165 return &storedMessageProtocol{protocol, name, typeId, seqid} 168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, … [all …]
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/LocalDB/ |
H A D | Qual.t | 26 my $seqid = '17601979'; 29 is ref($db->qual($seqid)), 'ARRAY'; 31 is $db->length($seqid), 14; 33 is $db->header($seqid), '17601979'; 42 ok my $obj = $db->get_Qual_by_id($seqid); 45 is ref($obj->qual($seqid)), 'ARRAY'; 51 is $obj->validate_qual( join(' ', @{$obj->qual($seqid)}) ), 1; 60 is ref($truncobj->qual($seqid)), 'ARRAY'; 87 ok $h{$seqid}; 88 ok $dna1 = $h{"$seqid:1,10"}; [all …]
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/dports/devel/thrift/thrift-0.14.0/lib/nodejs/lib/thrift/ |
H A D | multiplexed_protocol.js | 32 MultiplexProtocol.prototype.writeMessageBegin = function(name, type, seqid) { argument 34 connection.seqId2Service[seqid] = serviceName; 38 seqid); argument 40 MultiplexProtocol.super_.prototype.writeMessageBegin.call(this, name, type, seqid); argument 48 this.seqid = 0; 55 var writeCb = function(buf, seqid) { argument 56 connection.write(buf,seqid); 63 self.seqid += 1; 64 return self.seqid;
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/dports/www/grafana8/grafana-8.3.6/vendor/github.com/apache/thrift/lib/cpp/src/thrift/ |
H A D | TDispatchProcessor.h | 55 int32_t seqid; in process() local 56 inRaw->readMessageBegin(fname, mtype, seqid); in process() 68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process() 75 int32_t seqid; in processFast() local 76 in->readMessageBegin(fname, mtype, seqid); in processFast() 92 int32_t seqid, 98 int32_t seqid, 113 int32_t seqid; in process() local 114 in->readMessageBegin(fname, mtype, seqid); in process() 121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process() [all …]
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/dports/net/storj/storj-1.45.3/vendor/github.com/apache/thrift/lib/cpp/src/thrift/ |
H A D | TDispatchProcessor.h | 55 int32_t seqid; in process() local 56 inRaw->readMessageBegin(fname, mtype, seqid); in process() 68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process() 75 int32_t seqid; in processFast() local 76 in->readMessageBegin(fname, mtype, seqid); in processFast() 92 int32_t seqid, 98 int32_t seqid, 113 int32_t seqid; in process() local 114 in->readMessageBegin(fname, mtype, seqid); in process() 121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process() [all …]
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/dports/www/fabio/fabio-1.5.14/vendor/github.com/apache/thrift/thrift-da1169d75b15/lib/cpp/src/thrift/ |
H A D | TDispatchProcessor.h | 55 int32_t seqid; in process() local 56 inRaw->readMessageBegin(fname, mtype, seqid); in process() 68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process() 75 int32_t seqid; in processFast() local 76 in->readMessageBegin(fname, mtype, seqid); in processFast() 92 int32_t seqid, 98 int32_t seqid, 113 int32_t seqid; in process() local 114 in->readMessageBegin(fname, mtype, seqid); in process() 121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process() [all …]
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/dports/devel/thrift-c_glib/thrift-0.14.0/lib/cpp/src/thrift/ |
H A D | TDispatchProcessor.h | 55 int32_t seqid; in process() local 56 inRaw->readMessageBegin(fname, mtype, seqid); in process() 68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process() 75 int32_t seqid; in processFast() local 76 in->readMessageBegin(fname, mtype, seqid); in processFast() 92 int32_t seqid, 98 int32_t seqid, 113 int32_t seqid; in process() local 114 in->readMessageBegin(fname, mtype, seqid); in process() 121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process() [all …]
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/dports/devel/thrift-cpp/thrift-0.14.0/lib/cpp/src/thrift/ |
H A D | TDispatchProcessor.h | 55 int32_t seqid; in process() local 56 inRaw->readMessageBegin(fname, mtype, seqid); in process() 68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process() 75 int32_t seqid; in processFast() local 76 in->readMessageBegin(fname, mtype, seqid); in processFast() 92 int32_t seqid, 98 int32_t seqid, 113 int32_t seqid; in process() local 114 in->readMessageBegin(fname, mtype, seqid); in process() 121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process() [all …]
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