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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_writer/unit_test/data/
H A Dredundant_deflines.asn4 seqid {
25 seqid {
38 seqid {
51 seqid {
64 seqid {
77 seqid {
90 seqid {
103 seqid {
116 seqid {
129 seqid {
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_writer/unit_test/data/
H A Dredundant_deflines.asn4 seqid {
25 seqid {
38 seqid {
51 seqid {
64 seqid {
77 seqid {
90 seqid {
103 seqid {
116 seqid {
129 seqid {
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/dports/biology/p5-Bio-Graphics/Bio-Graphics-2.40/lib/Bio/Graphics/Wiggle/
H A DLoader.pm258 for my $seqid (@seqid) {
259 $seqid or next;
264 $seqids->{$seqid}{start},
265 $seqids->{$seqid}{end},
272 push @lines,"$track $seqid.data $seqids->{$seqid}{start}..$seqids->{$seqid}{end} $attributes";
430 $seqids->{$seqid}{min} = $stats{$seqid}->min();
431 $seqids->{$seqid}{max} = $stats{$seqid}->max();
432 $seqids->{$seqid}{mean} = $stats{$seqid}->mean();
433 $seqids->{$seqid}{stdev} = $stats{$seqid}->standard_deviation();
609 my $seqid = shift;
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Location/
H A DSplit.pm116 $seqid && $self->seq_id($seqid);
180 my $seqid = $self->seq_id();
190 my @locs = ($seqid ?
216 if($seqid) {
291 $seqid = $loc->seq_id() if(! $seqid);
572 my $seqid = $self->seq_id;
578 my @same_id_locs = ($seqid ? grep { $_->seq_id eq $seqid } @locs
619 my $seqid = $self->seq_id;
625 my @same_id_locs = ($seqid ? grep { $_->seq_id eq $seqid } @locs
667 my $seqid = $self->seq_id;
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_writer/
H A Dmultisource_util.cpp85 CRef<CSeq_id> seqid; in AccessionToKey() local
90 if (CheckAccession(acc, gi, seqid, specific)) { in AccessionToKey()
91 if (seqid.Empty()) { in AccessionToKey()
96 GetSeqIdKey(*seqid, str); in AccessionToKey()
101 GetSeqIdKey(*seqid, str); in AccessionToKey()
110 CRef<objects::CSeq_id> & seqid, in CheckAccession() argument
115 seqid.Reset(); in CheckAccession()
134 seqid.Reset(new CSeq_id(acc)); in CheckAccession()
140 if (seqid->IsGi()) { in CheckAccession()
141 gi = seqid->GetGi(); in CheckAccession()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_writer/
H A Dmultisource_util.cpp85 CRef<CSeq_id> seqid; in AccessionToKey() local
90 if (CheckAccession(acc, gi, seqid, specific)) { in AccessionToKey()
91 if (seqid.Empty()) { in AccessionToKey()
96 GetSeqIdKey(*seqid, str); in AccessionToKey()
101 GetSeqIdKey(*seqid, str); in AccessionToKey()
110 CRef<objects::CSeq_id> & seqid, in CheckAccession() argument
115 seqid.Reset(); in CheckAccession()
134 seqid.Reset(new CSeq_id(acc)); in CheckAccession()
140 if (seqid->IsGi()) { in CheckAccession()
141 gi = seqid->GetGi(); in CheckAccession()
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/dports/security/keybase/client-v5.7.1/go/vendor/github.com/keybase/go-framed-msgpack-rpc/rpc/
H A Dcall.go15 seqid SeqNumber member
27 seqid SeqNumber member
33 seqid: 0,
51 seqid: cc.nextSeqid(),
60 ret := cc.seqid
61 cc.seqid++
69 cc.calls[c.seqid] = c
72 func (cc *callContainer) RetrieveCall(seqid SeqNumber) *call {
76 return cc.calls[seqid]
79 func (cc *callContainer) RemoveCall(seqid SeqNumber) {
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/dports/biology/vcflib/vcflib-1.0.2/src/
H A Dsmoother.cpp30 int seqid; member
138 if(seqid != sline[opt.seqid]){ in processSeqid()
299 opt.seqid = 0; in main()
304 opt.seqid = 0; in main()
309 opt.seqid = 0; in main()
314 opt.seqid = 0; in main()
319 opt.seqid = 0; in main()
324 opt.seqid = 0; in main()
329 opt.seqid = 0; in main()
334 opt.seqid = 0; in main()
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/dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/
H A Dsmoother.cpp21 int seqid; member
127 if(seqid != sline[opt.seqid]){ in processSeqid()
288 opt.seqid = 0; in main()
293 opt.seqid = 0; in main()
298 opt.seqid = 0; in main()
303 opt.seqid = 0; in main()
308 opt.seqid = 0; in main()
313 opt.seqid = 0; in main()
318 opt.seqid = 0; in main()
323 opt.seqid = 0; in main()
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/dports/biology/freebayes/freebayes-1.3.5/vcflib/src/
H A Dsmoother.cpp21 int seqid; member
127 if(seqid != sline[opt.seqid]){ in processSeqid()
288 opt.seqid = 0; in main()
293 opt.seqid = 0; in main()
298 opt.seqid = 0; in main()
303 opt.seqid = 0; in main()
308 opt.seqid = 0; in main()
313 opt.seqid = 0; in main()
318 opt.seqid = 0; in main()
323 opt.seqid = 0; in main()
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/dports/biology/py-ete3/ete3-3.1.2/ete3/phylomedb/
H A DphylomeDB.py235 def get_id_translations(self, seqid): argument
454 (seqid[:3],int(seqid[3:]))
461 trees = {seqid:{}}
463 %(self._trees_table, seqid[:3], seqid[3:])
481 trees = {seqid:{}}
483 %(self._trees_table, seqid[:3], seqid[3:])
505 trees = {seqid:{}}
507 %(self._trees_table, seqid[:3], seqid[3:], phylomeid)
645 if type(seqid) == str:
646 seqid = [seqid]
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/dports/net/storj/storj-1.45.3/vendor/github.com/apache/thrift/lib/go/thrift/
H A Dmultiplexed_protocol.go71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err…
73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid)
75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid)
132 name, typeId, seqid, err := in.ReadMessageBegin()
143 smb := NewStoredMessageProtocol(in, name, typeId, seqid)
152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid)
161 seqid int32 member
164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s…
165 return &storedMessageProtocol{protocol, name, typeId, seqid}
168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, …
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/dports/net/concourse-fly/concourse-6.7.1/vendor/github.com/apache/thrift/lib/go/thrift/
H A Dmultiplexed_protocol.go71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err…
73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid)
75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid)
132 name, typeId, seqid, err := in.ReadMessageBegin()
143 smb := NewStoredMessageProtocol(in, name, typeId, seqid)
152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid)
161 seqid int32 member
164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s…
165 return &storedMessageProtocol{protocol, name, typeId, seqid}
168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, …
[all …]
/dports/games/automuteus/automuteus-6.15.2/vendor/go.opentelemetry.io/otel/exporters/trace/jaeger/internal/third_party/thrift/lib/go/thrift/
H A Dmultiplexed_protocol.go71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err…
73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid)
75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid)
132 name, typeId, seqid, err := in.ReadMessageBegin()
143 smb := NewStoredMessageProtocol(in, name, typeId, seqid)
152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid)
161 seqid int32 member
164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s…
165 return &storedMessageProtocol{protocol, name, typeId, seqid}
168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, …
[all …]
/dports/www/fabio/fabio-1.5.14/vendor/github.com/apache/thrift/thrift-da1169d75b15/lib/go/thrift/
H A Dmultiplexed_protocol.go71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err…
73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid)
75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid)
132 name, typeId, seqid, err := in.ReadMessageBegin()
143 smb := NewStoredMessageProtocol(in, name, typeId, seqid)
152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid)
161 seqid int32 member
164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s…
165 return &storedMessageProtocol{protocol, name, typeId, seqid}
168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, …
[all …]
/dports/www/fabio/fabio-1.5.14/vendor/github.com/apache/thrift/lib/go/thrift/
H A Dmultiplexed_protocol.go71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err…
73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid)
75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid)
132 name, typeId, seqid, err := in.ReadMessageBegin()
143 smb := NewStoredMessageProtocol(in, name, typeId, seqid)
152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid)
161 seqid int32 member
164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s…
165 return &storedMessageProtocol{protocol, name, typeId, seqid}
168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, …
[all …]
/dports/misc/concourse/concourse-6.7.2/vendor/github.com/apache/thrift/lib/go/thrift/
H A Dmultiplexed_protocol.go71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err…
73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid)
75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid)
132 name, typeId, seqid, err := in.ReadMessageBegin()
143 smb := NewStoredMessageProtocol(in, name, typeId, seqid)
152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid)
161 seqid int32 member
164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s…
165 return &storedMessageProtocol{protocol, name, typeId, seqid}
168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, …
[all …]
/dports/net/storj/storj-1.45.3/vendor/go.opentelemetry.io/otel/exporters/trace/jaeger/internal/third_party/thrift/lib/go/thrift/
H A Dmultiplexed_protocol.go71 func (t *TMultiplexedProtocol) WriteMessageBegin(name string, typeId TMessageType, seqid int32) err…
73 return t.TProtocol.WriteMessageBegin(t.serviceName+MULTIPLEXED_SEPARATOR+name, typeId, seqid)
75 return t.TProtocol.WriteMessageBegin(name, typeId, seqid)
132 name, typeId, seqid, err := in.ReadMessageBegin()
143 smb := NewStoredMessageProtocol(in, name, typeId, seqid)
152 smb := NewStoredMessageProtocol(in, v[1], typeId, seqid)
161 seqid int32 member
164 func NewStoredMessageProtocol(protocol TProtocol, name string, typeId TMessageType, seqid int32) *s…
165 return &storedMessageProtocol{protocol, name, typeId, seqid}
168 func (s *storedMessageProtocol) ReadMessageBegin() (name string, typeId TMessageType, seqid int32, …
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/LocalDB/
H A DQual.t26 my $seqid = '17601979';
29 is ref($db->qual($seqid)), 'ARRAY';
31 is $db->length($seqid), 14;
33 is $db->header($seqid), '17601979';
42 ok my $obj = $db->get_Qual_by_id($seqid);
45 is ref($obj->qual($seqid)), 'ARRAY';
51 is $obj->validate_qual( join(' ', @{$obj->qual($seqid)}) ), 1;
60 is ref($truncobj->qual($seqid)), 'ARRAY';
87 ok $h{$seqid};
88 ok $dna1 = $h{"$seqid:1,10"};
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/dports/devel/thrift/thrift-0.14.0/lib/nodejs/lib/thrift/
H A Dmultiplexed_protocol.js32 MultiplexProtocol.prototype.writeMessageBegin = function(name, type, seqid) { argument
34 connection.seqId2Service[seqid] = serviceName;
38 seqid); argument
40 MultiplexProtocol.super_.prototype.writeMessageBegin.call(this, name, type, seqid); argument
48 this.seqid = 0;
55 var writeCb = function(buf, seqid) { argument
56 connection.write(buf,seqid);
63 self.seqid += 1;
64 return self.seqid;
/dports/www/grafana8/grafana-8.3.6/vendor/github.com/apache/thrift/lib/cpp/src/thrift/
H A DTDispatchProcessor.h55 int32_t seqid; in process() local
56 inRaw->readMessageBegin(fname, mtype, seqid); in process()
68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process()
75 int32_t seqid; in processFast() local
76 in->readMessageBegin(fname, mtype, seqid); in processFast()
92 int32_t seqid,
98 int32_t seqid,
113 int32_t seqid; in process() local
114 in->readMessageBegin(fname, mtype, seqid); in process()
121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process()
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/dports/net/storj/storj-1.45.3/vendor/github.com/apache/thrift/lib/cpp/src/thrift/
H A DTDispatchProcessor.h55 int32_t seqid; in process() local
56 inRaw->readMessageBegin(fname, mtype, seqid); in process()
68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process()
75 int32_t seqid; in processFast() local
76 in->readMessageBegin(fname, mtype, seqid); in processFast()
92 int32_t seqid,
98 int32_t seqid,
113 int32_t seqid; in process() local
114 in->readMessageBegin(fname, mtype, seqid); in process()
121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process()
[all …]
/dports/www/fabio/fabio-1.5.14/vendor/github.com/apache/thrift/thrift-da1169d75b15/lib/cpp/src/thrift/
H A DTDispatchProcessor.h55 int32_t seqid; in process() local
56 inRaw->readMessageBegin(fname, mtype, seqid); in process()
68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process()
75 int32_t seqid; in processFast() local
76 in->readMessageBegin(fname, mtype, seqid); in processFast()
92 int32_t seqid,
98 int32_t seqid,
113 int32_t seqid; in process() local
114 in->readMessageBegin(fname, mtype, seqid); in process()
121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process()
[all …]
/dports/devel/thrift-c_glib/thrift-0.14.0/lib/cpp/src/thrift/
H A DTDispatchProcessor.h55 int32_t seqid; in process() local
56 inRaw->readMessageBegin(fname, mtype, seqid); in process()
68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process()
75 int32_t seqid; in processFast() local
76 in->readMessageBegin(fname, mtype, seqid); in processFast()
92 int32_t seqid,
98 int32_t seqid,
113 int32_t seqid; in process() local
114 in->readMessageBegin(fname, mtype, seqid); in process()
121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process()
[all …]
/dports/devel/thrift-cpp/thrift-0.14.0/lib/cpp/src/thrift/
H A DTDispatchProcessor.h55 int32_t seqid; in process() local
56 inRaw->readMessageBegin(fname, mtype, seqid); in process()
68 return this->dispatchCall(inRaw, outRaw, fname, seqid, connectionContext); in process()
75 int32_t seqid; in processFast() local
76 in->readMessageBegin(fname, mtype, seqid); in processFast()
92 int32_t seqid,
98 int32_t seqid,
113 int32_t seqid; in process() local
114 in->readMessageBegin(fname, mtype, seqid); in process()
121 return dispatchCall(in.get(), out.get(), fname, seqid, connectionContext); in process()
[all …]

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