| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/quantum/ |
| H A D | GamessUSReader.java | 266 setAtomCoordXYZ(atom, x * ANGSTROMS_PER_BOHR, y * ANGSTROMS_PER_BOHR, z * ANGSTROMS_PER_BOHR); in readEFPInBohrCoordinates()
296 setAtomCoordXYZ(atom, x * ANGSTROMS_PER_BOHR, y * ANGSTROMS_PER_BOHR, z * ANGSTROMS_PER_BOHR); in readAtomsInBohrCoordinates()
327 setAtomCoordXYZ(atom, x, y, z); in readAtomsInAngstromCoordinates()
379 setAtomCoordXYZ(atom, x, y, z); in readAtomsInAngstromCoordinates()
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| H A D | MopacGraphfReader.java | 72 setAtomCoordXYZ(atom, parseFloatRange(line, 4, 17), in readAtoms()
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| H A D | QCJSONReader.java | 130 … setAtomCoordXYZ(atom, (float)(coords[pt++] * f), (float)(coords[pt++] * f), (float) (coords[pt++] in readSteps()
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| H A D | GaussianFchkReader.java | 201 setAtomCoordXYZ(atom, data[pt++] * f, data[pt++] * f, data[pt++] * f); in readAtoms()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/xtal/ |
| H A D | SiestaReader.java | 275 public void setAtomCoordXYZ(Atom atom, float x, float y, float z) { in setAtomCoordXYZ() method in SiestaReader
276 super.setAtomCoordXYZ(atom, getACFValue(x), getACFValue(y), getACFValue(z)); in setAtomCoordXYZ()
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| H A D | Wien2kReader.java | 183 setAtomCoordXYZ(atom, a, b, c); in addAtom()
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| H A D | ShelxReader.java | 246 setAtomCoordXYZ(atom, x, y, z); in assumeAtomRecord()
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| H A D | CrystalReader.java | 1262 setAtomCoordXYZ(atom, x, y, z); in readAtoms()
1378 setAtomCoordXYZ(atom, x, y, z); in processCoordLines()
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| H A D | JanaReader.java | 450 setAtomCoordXYZ(atom, floats[3], floats[4], floats[5]); in readM40Data()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/simple/ |
| H A D | HyperChemReader.java | 102 setAtomCoordXYZ(atom, parseFloat(), parseFloat(), parseFloat()); in processAtom()
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| H A D | JmeReader.java | 84 setAtomCoordXYZ(atom, parseFloat(), parseFloat(), 0); in readAtoms()
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| H A D | JSONReader.java | 136 setAtomCoordXYZ(atom, x, y, z); in readAtoms()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/spartan/ |
| H A D | SpartanReader.java | 83 …setAtomCoordXYZ(atom, parseFloatRange(line, 17, 30), parseFloatRange(line, 31, 44), parseFloatRang… in readAtoms()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/more/ |
| H A D | MdTopReader.java | 115 setAtomCoordXYZ(atoms[i], (i % 100) * 2, j * 2, 0); in finalizeSubclassReader()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/xml/ |
| H A D | XmlVaspReader.java | 225 parent.setAtomCoordXYZ(atom, fdata[fpt++], fdata[fpt++], fdata[fpt++]);
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/molxyz/ |
| H A D | MolReader.java | 453 setAtomCoordXYZ(atom, x, y, z); in addMolAtom()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/smarter/ |
| H A D | AtomSetCollectionReader.java | 1227 public void setAtomCoordXYZ(Atom atom, float x, float y, float z) { in setAtomCoordXYZ() method in AtomSetCollectionReader
1235 setAtomCoordXYZ(atom, parseFloatStr(tokens[i]) * f, in setAtomCoordScaled()
1241 setAtomCoordXYZ(atom, parseFloatStr(tokens[i]), parseFloatStr(tokens[i + 1]), in setAtomCoordTokens()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/cif/ |
| H A D | MMTFReader.java | 292 setAtomCoordXYZ(a, x[iatom], y[iatom], z[iatom]); in getMMTFAtoms()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/pdb/ |
| H A D | PdbReader.java | 957 setAtomCoordXYZ(atom, x, y, z); in processAtom2()
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