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Searched refs:set_M (Results 1 – 25 of 25) sorted by relevance

/dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/
H A Dkaln.c127 #define set_M(MM, cur, p, sc) \ macro
263 set_M(s->M, q, last + i - 1, mat[seq1[i]]); /* this will change s->M ! */ in ka_global_core()
267 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
282 set_M(s->M, q, last + i - 1, mat[seq1[i]]); /* this will change s->M ! */ in ka_global_core()
286 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
301 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
305 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
316 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
320 set_M(s->M, q, last + len1 - 1, mat[seq1[i]]); in ka_global_core()
330 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
[all …]
/dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/
H A Dkaln.c127 #define set_M(MM, cur, p, sc) \ macro
263 set_M(s->M, q, last + i - 1, mat[seq1[i]]); /* this will change s->M ! */ in ka_global_core()
267 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
282 set_M(s->M, q, last + i - 1, mat[seq1[i]]); /* this will change s->M ! */ in ka_global_core()
286 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
301 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
305 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
316 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
320 set_M(s->M, q, last + len1 - 1, mat[seq1[i]]); in ka_global_core()
330 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
[all …]
/dports/biology/seqan1/seqan-1.3.1/lib/samtools/
H A Dkaln.c127 #define set_M(MM, cur, p, sc) \ macro
263 set_M(s->M, q, last + i - 1, mat[seq1[i]]); /* this will change s->M ! */ in ka_global_core()
267 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
282 set_M(s->M, q, last + i - 1, mat[seq1[i]]); /* this will change s->M ! */ in ka_global_core()
286 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
301 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
305 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
316 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
320 set_M(s->M, q, last + len1 - 1, mat[seq1[i]]); in ka_global_core()
330 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in ka_global_core()
[all …]
/dports/biology/rainbow/rainbow_2.0.4/
H A Dstdaln.c240 #define set_M(MM, cur, p, sc) \ macro
390 set_M(s->M, q, last + i - 1, mat[seq1[i]]); /* this will change s->M ! */ in aln_global_core()
394 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in aln_global_core()
409 set_M(s->M, q, last + i - 1, mat[seq1[i]]); /* this will change s->M ! */ in aln_global_core()
413 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in aln_global_core()
428 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in aln_global_core()
432 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in aln_global_core()
443 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in aln_global_core()
447 set_M(s->M, q, last + len1 - 1, mat[seq1[i]]); in aln_global_core()
457 set_M(s->M, q, last + i - 1, mat[seq1[i]]); in aln_global_core()
[all …]
H A Dtags745 set_M stdaln.c 240;" d file:
/dports/devel/ppl/ppl-1.2/tests/Concrete_Expression/
H A Ddigitalfilters1.cc99 set_M(Coefficient& M, int m) { in set_M() function
136 set_M(M, 144); in test01()
222 set_M(M, 144); in test02()
313 set_M(M, 136); in test03()
403 set_M(M, 128); in test04()
503 set_M(M, 144); in test05()
712 set_M(M, 144); in test06()
921 set_M(M, 144); in test07()
/dports/astro/kstars/kstars-3.5.6/kstars/skyobjects/
H A Dkspluto.cpp68 set_M(M0.Degrees() + M1 * t); in findGeocentricPosition()
H A Dksasteroid.h211 void set_M(double newM) { M.setD(newM); } in set_M() function
/dports/astro/wcslib/wcslib-7.7/C/
H A Dtab.h616 int set_M; member
H A Dtab.c100 tab->set_M = 0; in tabini()
513 tab->set_M = 0; in tabfree()
846 if (tab->flag != TABSET || tab->set_M < M) { in tabset()
877 tab->set_M = M; in tabset()
/dports/astro/py-astropy/astropy-5.0/astropy/wcs/include/wcslib/
H A Dtab.h616 int set_M; member
/dports/astro/py-astropy/astropy-5.0/cextern/wcslib/C/
H A Dtab.h616 int set_M; member
H A Dtab.c100 tab->set_M = 0; in tabini()
513 tab->set_M = 0; in tabfree()
846 if (tab->flag != TABSET || tab->set_M < M) { in tabset()
877 tab->set_M = M; in tabset()
/dports/astro/siril/siril/subprojects/wcslib/
H A Dtab.h588 int set_M; member
H A Dtab.c105 tab->set_M = 0; in tabini()
524 tab->set_M = 0; in tabfree()
791 if (tab->flag != TABSET || tab->set_M < M) { in tabset()
822 tab->set_M = M; in tabset()
/dports/math/geogram/geogram-1.7.7/src/lib/geogram/numerics/
H A Doptimizer.h153 void set_M(index_t M) { in set_M() function
/dports/math/ogdf/OGDF/include/ogdf/energybased/fmmm/new_multipole_method/
H A DQuadTreeNodeNM.h74 void set_M(List<QuadTreeNodeNM*>& list) {M = list;} in set_M() function
/dports/math/barvinok/barvinok-0.41.5/
H A Dverify.c38 static int set_M(void *opt, long val) in set_M() function
65 ISL_ARG_USER_LONG(struct verify_options, M, 'M', "max", set_M, INT_MIN, NULL) in ISL_ARGS_START()
/dports/math/geogram/geogram-1.7.7/src/lib/exploragram/optimal_transport/
H A Doptimal_transport.cpp407 optimizer->set_M(m); in optimize()
506 optimizer->set_M(m); in optimize_level()
H A DVSDM.cpp175 optimizer_->set_M(m); in optimize()
/dports/math/geogram/geogram-1.7.7/src/lib/geogram/voronoi/
H A DCVT.cpp307 optimizer->set_M(m); in Newton_iterations()
/dports/math/geogram/geogram-1.7.7/src/tests/test_HLBFGS/
H A Dmain.cpp210 optimizer->set_M((unsigned int)M); in Optimize_by_HLBFGS()
/dports/math/geogram/geogram-1.7.7/src/lib/exploragram/hexdom/
H A DFF.cpp336 solver->set_M(3); in FF_smooth()
/dports/math/ogdf/OGDF/src/ogdf/energybased/fmmm/
H A DNewMultipoleMethod.cpp1767 act_node_ptr->set_M(M); in calculate_local_expansions_and_WSPRLS()
/dports/science/siconos/siconos-4.4.0/wrap/utils/
H A Dxml_parser.py3051 def set_M(self, M): self.M = M member in FirstOrderNonLinearDSType
3191 def set_M(self, M): self.M = M member in FirstOrderLinearDSType
3325 def set_M(self, M): self.M = M member in FirstOrderLinearTIDSType
6558 def set_M(self, M): self.M = M member in RelayType