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Searched refs:set_sub_array_size (Results 1 – 22 of 22) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/bitset/
H A Dbmrs.h325 for (j = 0; j < bm::set_sub_array_size; ++j) in find()
339 BM_ASSERT(j < bm::set_sub_array_size); in find()
341 block_idx_type nb = (i * bm::set_sub_array_size) + j; in find()
399 for (j = 0; j < bm::set_sub_array_size; ++j) in find()
434 BM_ASSERT(j < bm::set_sub_array_size); in find()
459 BM_ASSERT(j < bm::set_sub_array_size); in find()
460 *nb = (i * bm::set_sub_array_size) + j; in find()
482 set_super_block(i, bm::set_sub_array_size * bm::gap_max_bits); in set_full_super_block()
564 block_matr_.resize(sb_eff+1, bm::set_sub_array_size); in resize_effective_super_blocks()
565 sub_block_matr_.resize(sb_eff+1, bm::set_sub_array_size); in resize_effective_super_blocks()
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H A Dbmblocks.h503 nb += bm::set_sub_array_size - j;
688 } while (++j < bm::set_sub_array_size); in set_all_set()
710 j_to = bm::set_sub_array_size; in set_all_zero()
763 } while (++j < bm::set_sub_array_size); in set_all_zero()
1346 if (++j == bm::set_sub_array_size) in opt_copy_bit_block()
1603 if (j == bm::set_sub_array_size-1) in zero_block()
1986 } while (j < bm::set_sub_array_size); in deallocate_top_subblock()
2117 nb_empty += bm::set_sub_array_size; in calc_serialization_null_full()
2136 nb_full += bm::set_sub_array_size; in calc_serialization_null_full()
2160 } while (++j < bm::set_sub_array_size); in calc_serialization_null_full()
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H A Dbm.h2293 } while (j < bm::set_sub_array_size); in count()
2358 unsigned bcount[bm::set_sub_array_size]; in build_rs_index()
2359 unsigned sub_count[bm::set_sub_array_size]; in build_rs_index()
2450 } while (++j < bm::set_sub_array_size); in build_rs_index()
3092 } while (++j < bm::set_sub_array_size); in invert()
3440 } while (++j < bm::set_sub_array_size); in find_first_mismatch()
5490 } while (j < bm::set_sub_array_size); in combine_operation_or()
5582 } while (j < bm::set_sub_array_size); in combine_operation_xor()
5677 } while (j < bm::set_sub_array_size); in combine_operation_and()
5747 } while (j < bm::set_sub_array_size); in combine_operation_sub()
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H A Dbmconst.h94 const unsigned set_sub_array_size = set_array_size32; variable
99 const unsigned set_sub_total_bits = bm::set_sub_array_size * bm::gap_max_bits;
106 const id64_t set_total_blocks = id64_t(bm::set_top_array_size) * set_sub_array_size;
H A Dbmaggregator.h529 } while (++j < bm::set_sub_array_size); in aggregator_pipeline_execute()
789 if (j == bm::set_sub_array_size-1) in combine_and_sub()
872 unsigned set_array_max = bm::set_sub_array_size; in find_first_and_sub()
934 return bm::set_sub_array_size; in find_effective_sub_block_size()
951 return bm::set_sub_array_size; in find_effective_sub_block_size()
961 if (max_size == bm::set_sub_array_size - 1) in find_effective_sub_block_size()
965 BM_ASSERT(max_size <= bm::set_sub_array_size); in find_effective_sub_block_size()
992 if (++j == bm::set_sub_array_size) in combine_or()
1049 if (++j == bm::set_sub_array_size) in combine_and()
1729 } while (++j < bm::set_sub_array_size); in combine_shift_right_and()
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H A Dbmalgo_impl.h736 block_idx += bm::set_sub_array_size; in distance_operation()
742 block_idx += bm::set_sub_array_size; in distance_operation()
747 for (j = 0; j < bm::set_sub_array_size; ++j,++block_idx) in distance_operation()
759 for (j = 0; j < bm::set_sub_array_size; ++j, ++block_idx) in distance_operation()
817 for (unsigned j = 0; j < bm::set_sub_array_size; j+=4) in distance_and_operation()
894 block_idx += bm::set_sub_array_size; in distance_operation_any()
901 block_idx += bm::set_sub_array_size; in distance_operation_any()
938 for (j = 0; j < bm::set_sub_array_size; ++j, ++block_idx) in distance_operation_any()
1765 j_to = bm::set_sub_array_size-1; in for_each_bit_block_range()
1789 } while (++j < bm::set_sub_array_size); in for_each_bit_block_range()
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H A Dbmfunc.h1840 j_to = bm::set_sub_array_size-1; in for_each_nzblock_range()
1872 } while (++j < bm::set_sub_array_size); in for_each_nzblock_range()
1895 size_type r = i * bm::set_sub_array_size; in for_each_nzblock()
1900 } while (++j < bm::set_sub_array_size); in for_each_nzblock()
1905 size_type r = i * bm::set_sub_array_size; in for_each_nzblock()
1980 } while (j < bm::set_sub_array_size); in for_each_nzblock()
2101 } while (j < bm::set_sub_array_size); in for_each_nzblock2()
2120 block_idx += bm::set_sub_array_size; in for_each_nzblock_if()
9364 for (i = 0; i < bm::set_sub_array_size; ++i) in block_ptr_array_range()
9372 if (i == bm::set_sub_array_size) in block_ptr_array_range()
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H A Dbmalgo.h222 size_type r = size_type(i) * bm::set_sub_array_size; in for_each_bit()
247 } while (j < bm::set_sub_array_size); in for_each_bit()
H A Dbmintervals.h501 pos += bm::gap_max_bits * bm::set_sub_array_size; in find_interval_end()
537 } while (++j < bm::set_sub_array_size); in find_interval_end()
H A Dbmserial.h2749 i += (bm::set_sub_array_size - j0) - 1; in serialize()
4010 const typename BV::size_type sb_max_bc = bm::set_sub_array_size * bm::gap_max_bits; in decode_arr_sblock()
4387 nb_i += (bm::set_sub_array_size - j0); in deserialize()
6829 bv_block_idx+=bm::set_sub_array_size-j; in finalize_target_vector()
6834 for (; j < bm::set_sub_array_size; ++j, ++bv_block_idx) in finalize_target_vector()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/bitset/
H A Dbmrs.h325 for (j = 0; j < bm::set_sub_array_size; ++j) in find()
339 BM_ASSERT(j < bm::set_sub_array_size); in find()
341 block_idx_type nb = (i * bm::set_sub_array_size) + j; in find()
399 for (j = 0; j < bm::set_sub_array_size; ++j) in find()
434 BM_ASSERT(j < bm::set_sub_array_size); in find()
459 BM_ASSERT(j < bm::set_sub_array_size); in find()
460 *nb = (i * bm::set_sub_array_size) + j; in find()
482 set_super_block(i, bm::set_sub_array_size * bm::gap_max_bits); in set_full_super_block()
564 block_matr_.resize(sb_eff+1, bm::set_sub_array_size); in resize_effective_super_blocks()
565 sub_block_matr_.resize(sb_eff+1, bm::set_sub_array_size); in resize_effective_super_blocks()
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H A Dbmblocks.h503 nb += bm::set_sub_array_size - j;
688 } while (++j < bm::set_sub_array_size); in set_all_set()
710 j_to = bm::set_sub_array_size; in set_all_zero()
763 } while (++j < bm::set_sub_array_size); in set_all_zero()
1346 if (++j == bm::set_sub_array_size) in opt_copy_bit_block()
1603 if (j == bm::set_sub_array_size-1) in zero_block()
1986 } while (j < bm::set_sub_array_size); in deallocate_top_subblock()
2117 nb_empty += bm::set_sub_array_size; in calc_serialization_null_full()
2136 nb_full += bm::set_sub_array_size; in calc_serialization_null_full()
2160 } while (++j < bm::set_sub_array_size); in calc_serialization_null_full()
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H A Dbm.h2293 } while (j < bm::set_sub_array_size); in count()
2358 unsigned bcount[bm::set_sub_array_size]; in build_rs_index()
2359 unsigned sub_count[bm::set_sub_array_size]; in build_rs_index()
2450 } while (++j < bm::set_sub_array_size); in build_rs_index()
3092 } while (++j < bm::set_sub_array_size); in invert()
3440 } while (++j < bm::set_sub_array_size); in find_first_mismatch()
5490 } while (j < bm::set_sub_array_size); in combine_operation_or()
5582 } while (j < bm::set_sub_array_size); in combine_operation_xor()
5677 } while (j < bm::set_sub_array_size); in combine_operation_and()
5747 } while (j < bm::set_sub_array_size); in combine_operation_sub()
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H A Dbmconst.h94 const unsigned set_sub_array_size = set_array_size32; variable
99 const unsigned set_sub_total_bits = bm::set_sub_array_size * bm::gap_max_bits;
106 const id64_t set_total_blocks = id64_t(bm::set_top_array_size) * set_sub_array_size;
H A Dbmaggregator.h529 } while (++j < bm::set_sub_array_size); in aggregator_pipeline_execute()
789 if (j == bm::set_sub_array_size-1) in combine_and_sub()
872 unsigned set_array_max = bm::set_sub_array_size; in find_first_and_sub()
934 return bm::set_sub_array_size; in find_effective_sub_block_size()
951 return bm::set_sub_array_size; in find_effective_sub_block_size()
961 if (max_size == bm::set_sub_array_size - 1) in find_effective_sub_block_size()
965 BM_ASSERT(max_size <= bm::set_sub_array_size); in find_effective_sub_block_size()
992 if (++j == bm::set_sub_array_size) in combine_or()
1049 if (++j == bm::set_sub_array_size) in combine_and()
1729 } while (++j < bm::set_sub_array_size); in combine_shift_right_and()
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H A Dbmalgo_impl.h736 block_idx += bm::set_sub_array_size; in distance_operation()
742 block_idx += bm::set_sub_array_size; in distance_operation()
747 for (j = 0; j < bm::set_sub_array_size; ++j,++block_idx) in distance_operation()
759 for (j = 0; j < bm::set_sub_array_size; ++j, ++block_idx) in distance_operation()
817 for (unsigned j = 0; j < bm::set_sub_array_size; j+=4) in distance_and_operation()
894 block_idx += bm::set_sub_array_size; in distance_operation_any()
901 block_idx += bm::set_sub_array_size; in distance_operation_any()
938 for (j = 0; j < bm::set_sub_array_size; ++j, ++block_idx) in distance_operation_any()
1765 j_to = bm::set_sub_array_size-1; in for_each_bit_block_range()
1789 } while (++j < bm::set_sub_array_size); in for_each_bit_block_range()
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H A Dbmfunc.h1840 j_to = bm::set_sub_array_size-1; in for_each_nzblock_range()
1872 } while (++j < bm::set_sub_array_size); in for_each_nzblock_range()
1895 size_type r = i * bm::set_sub_array_size; in for_each_nzblock()
1900 } while (++j < bm::set_sub_array_size); in for_each_nzblock()
1905 size_type r = i * bm::set_sub_array_size; in for_each_nzblock()
1980 } while (j < bm::set_sub_array_size); in for_each_nzblock()
2101 } while (j < bm::set_sub_array_size); in for_each_nzblock2()
2120 block_idx += bm::set_sub_array_size; in for_each_nzblock_if()
9364 for (i = 0; i < bm::set_sub_array_size; ++i) in block_ptr_array_range()
9372 if (i == bm::set_sub_array_size) in block_ptr_array_range()
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H A Dbmalgo.h222 size_type r = size_type(i) * bm::set_sub_array_size; in for_each_bit()
247 } while (j < bm::set_sub_array_size); in for_each_bit()
H A Dbmintervals.h501 pos += bm::gap_max_bits * bm::set_sub_array_size; in find_interval_end()
537 } while (++j < bm::set_sub_array_size); in find_interval_end()
H A Dbmserial.h2749 i += (bm::set_sub_array_size - j0) - 1; in serialize()
4010 const typename BV::size_type sb_max_bc = bm::set_sub_array_size * bm::gap_max_bits; in decode_arr_sblock()
4387 nb_i += (bm::set_sub_array_size - j0); in deserialize()
6829 bv_block_idx+=bm::set_sub_array_size-j; in finalize_target_vector()
6834 for (; j < bm::set_sub_array_size; ++j, ++bv_block_idx) in finalize_target_vector()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/bitset/stress_test/
H A Dstress64.cpp1843 rsi.resize(bm::set_sub_array_size*5); in RSIndexTest()
1889 unsigned bcount[bm::set_sub_array_size]; in RSIndexTest()
1890 unsigned sub_count1[bm::set_sub_array_size]; in RSIndexTest()
1907 rsi.resize(bm::set_sub_array_size*4); in RSIndexTest()
1909 rsi.set_total(bm::set_sub_array_size*4); in RSIndexTest()
1945 bc = rsi.count(bm::set_sub_array_size); in RSIndexTest()
1947 rbc = rsi.rcount(bm::set_sub_array_size); in RSIndexTest()
1950 bc = rsi.count(bm::set_sub_array_size+1); in RSIndexTest()
1952 rbc = rsi.rcount(bm::set_sub_array_size+1); in RSIndexTest()
1960 bc = rsi.count(bm::set_sub_array_size*3); in RSIndexTest()
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H A Dstress32.cpp2508 matr.resize(3, bm::set_sub_array_size); in DynamicMatrixTest()
2580 rsi.resize(bm::set_sub_array_size*5); in RSIndexTest()
2626 unsigned bcount[bm::set_sub_array_size]; in RSIndexTest()
2644 rsi.resize(bm::set_sub_array_size*4); in RSIndexTest()
2646 rsi.set_total(bm::set_sub_array_size*4); in RSIndexTest()
2682 bc = rsi.count(bm::set_sub_array_size); in RSIndexTest()
2684 rbc = rsi.rcount(bm::set_sub_array_size); in RSIndexTest()
2687 bc = rsi.count(bm::set_sub_array_size+1); in RSIndexTest()
2689 rbc = rsi.rcount(bm::set_sub_array_size+1); in RSIndexTest()
2697 bc = rsi.count(bm::set_sub_array_size*3); in RSIndexTest()
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