/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/bitset/ |
H A D | bmrs.h | 325 for (j = 0; j < bm::set_sub_array_size; ++j) in find() 339 BM_ASSERT(j < bm::set_sub_array_size); in find() 341 block_idx_type nb = (i * bm::set_sub_array_size) + j; in find() 399 for (j = 0; j < bm::set_sub_array_size; ++j) in find() 434 BM_ASSERT(j < bm::set_sub_array_size); in find() 459 BM_ASSERT(j < bm::set_sub_array_size); in find() 460 *nb = (i * bm::set_sub_array_size) + j; in find() 482 set_super_block(i, bm::set_sub_array_size * bm::gap_max_bits); in set_full_super_block() 564 block_matr_.resize(sb_eff+1, bm::set_sub_array_size); in resize_effective_super_blocks() 565 sub_block_matr_.resize(sb_eff+1, bm::set_sub_array_size); in resize_effective_super_blocks() [all …]
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H A D | bmblocks.h | 503 nb += bm::set_sub_array_size - j; 688 } while (++j < bm::set_sub_array_size); in set_all_set() 710 j_to = bm::set_sub_array_size; in set_all_zero() 763 } while (++j < bm::set_sub_array_size); in set_all_zero() 1346 if (++j == bm::set_sub_array_size) in opt_copy_bit_block() 1603 if (j == bm::set_sub_array_size-1) in zero_block() 1986 } while (j < bm::set_sub_array_size); in deallocate_top_subblock() 2117 nb_empty += bm::set_sub_array_size; in calc_serialization_null_full() 2136 nb_full += bm::set_sub_array_size; in calc_serialization_null_full() 2160 } while (++j < bm::set_sub_array_size); in calc_serialization_null_full() [all …]
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H A D | bm.h | 2293 } while (j < bm::set_sub_array_size); in count() 2358 unsigned bcount[bm::set_sub_array_size]; in build_rs_index() 2359 unsigned sub_count[bm::set_sub_array_size]; in build_rs_index() 2450 } while (++j < bm::set_sub_array_size); in build_rs_index() 3092 } while (++j < bm::set_sub_array_size); in invert() 3440 } while (++j < bm::set_sub_array_size); in find_first_mismatch() 5490 } while (j < bm::set_sub_array_size); in combine_operation_or() 5582 } while (j < bm::set_sub_array_size); in combine_operation_xor() 5677 } while (j < bm::set_sub_array_size); in combine_operation_and() 5747 } while (j < bm::set_sub_array_size); in combine_operation_sub() [all …]
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H A D | bmconst.h | 94 const unsigned set_sub_array_size = set_array_size32; variable 99 const unsigned set_sub_total_bits = bm::set_sub_array_size * bm::gap_max_bits; 106 const id64_t set_total_blocks = id64_t(bm::set_top_array_size) * set_sub_array_size;
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H A D | bmaggregator.h | 529 } while (++j < bm::set_sub_array_size); in aggregator_pipeline_execute() 789 if (j == bm::set_sub_array_size-1) in combine_and_sub() 872 unsigned set_array_max = bm::set_sub_array_size; in find_first_and_sub() 934 return bm::set_sub_array_size; in find_effective_sub_block_size() 951 return bm::set_sub_array_size; in find_effective_sub_block_size() 961 if (max_size == bm::set_sub_array_size - 1) in find_effective_sub_block_size() 965 BM_ASSERT(max_size <= bm::set_sub_array_size); in find_effective_sub_block_size() 992 if (++j == bm::set_sub_array_size) in combine_or() 1049 if (++j == bm::set_sub_array_size) in combine_and() 1729 } while (++j < bm::set_sub_array_size); in combine_shift_right_and() [all …]
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H A D | bmalgo_impl.h | 736 block_idx += bm::set_sub_array_size; in distance_operation() 742 block_idx += bm::set_sub_array_size; in distance_operation() 747 for (j = 0; j < bm::set_sub_array_size; ++j,++block_idx) in distance_operation() 759 for (j = 0; j < bm::set_sub_array_size; ++j, ++block_idx) in distance_operation() 817 for (unsigned j = 0; j < bm::set_sub_array_size; j+=4) in distance_and_operation() 894 block_idx += bm::set_sub_array_size; in distance_operation_any() 901 block_idx += bm::set_sub_array_size; in distance_operation_any() 938 for (j = 0; j < bm::set_sub_array_size; ++j, ++block_idx) in distance_operation_any() 1765 j_to = bm::set_sub_array_size-1; in for_each_bit_block_range() 1789 } while (++j < bm::set_sub_array_size); in for_each_bit_block_range() [all …]
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H A D | bmfunc.h | 1840 j_to = bm::set_sub_array_size-1; in for_each_nzblock_range() 1872 } while (++j < bm::set_sub_array_size); in for_each_nzblock_range() 1895 size_type r = i * bm::set_sub_array_size; in for_each_nzblock() 1900 } while (++j < bm::set_sub_array_size); in for_each_nzblock() 1905 size_type r = i * bm::set_sub_array_size; in for_each_nzblock() 1980 } while (j < bm::set_sub_array_size); in for_each_nzblock() 2101 } while (j < bm::set_sub_array_size); in for_each_nzblock2() 2120 block_idx += bm::set_sub_array_size; in for_each_nzblock_if() 9364 for (i = 0; i < bm::set_sub_array_size; ++i) in block_ptr_array_range() 9372 if (i == bm::set_sub_array_size) in block_ptr_array_range() [all …]
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H A D | bmalgo.h | 222 size_type r = size_type(i) * bm::set_sub_array_size; in for_each_bit() 247 } while (j < bm::set_sub_array_size); in for_each_bit()
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H A D | bmintervals.h | 501 pos += bm::gap_max_bits * bm::set_sub_array_size; in find_interval_end() 537 } while (++j < bm::set_sub_array_size); in find_interval_end()
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H A D | bmserial.h | 2749 i += (bm::set_sub_array_size - j0) - 1; in serialize() 4010 const typename BV::size_type sb_max_bc = bm::set_sub_array_size * bm::gap_max_bits; in decode_arr_sblock() 4387 nb_i += (bm::set_sub_array_size - j0); in deserialize() 6829 bv_block_idx+=bm::set_sub_array_size-j; in finalize_target_vector() 6834 for (; j < bm::set_sub_array_size; ++j, ++bv_block_idx) in finalize_target_vector()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/bitset/ |
H A D | bmrs.h | 325 for (j = 0; j < bm::set_sub_array_size; ++j) in find() 339 BM_ASSERT(j < bm::set_sub_array_size); in find() 341 block_idx_type nb = (i * bm::set_sub_array_size) + j; in find() 399 for (j = 0; j < bm::set_sub_array_size; ++j) in find() 434 BM_ASSERT(j < bm::set_sub_array_size); in find() 459 BM_ASSERT(j < bm::set_sub_array_size); in find() 460 *nb = (i * bm::set_sub_array_size) + j; in find() 482 set_super_block(i, bm::set_sub_array_size * bm::gap_max_bits); in set_full_super_block() 564 block_matr_.resize(sb_eff+1, bm::set_sub_array_size); in resize_effective_super_blocks() 565 sub_block_matr_.resize(sb_eff+1, bm::set_sub_array_size); in resize_effective_super_blocks() [all …]
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H A D | bmblocks.h | 503 nb += bm::set_sub_array_size - j; 688 } while (++j < bm::set_sub_array_size); in set_all_set() 710 j_to = bm::set_sub_array_size; in set_all_zero() 763 } while (++j < bm::set_sub_array_size); in set_all_zero() 1346 if (++j == bm::set_sub_array_size) in opt_copy_bit_block() 1603 if (j == bm::set_sub_array_size-1) in zero_block() 1986 } while (j < bm::set_sub_array_size); in deallocate_top_subblock() 2117 nb_empty += bm::set_sub_array_size; in calc_serialization_null_full() 2136 nb_full += bm::set_sub_array_size; in calc_serialization_null_full() 2160 } while (++j < bm::set_sub_array_size); in calc_serialization_null_full() [all …]
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H A D | bm.h | 2293 } while (j < bm::set_sub_array_size); in count() 2358 unsigned bcount[bm::set_sub_array_size]; in build_rs_index() 2359 unsigned sub_count[bm::set_sub_array_size]; in build_rs_index() 2450 } while (++j < bm::set_sub_array_size); in build_rs_index() 3092 } while (++j < bm::set_sub_array_size); in invert() 3440 } while (++j < bm::set_sub_array_size); in find_first_mismatch() 5490 } while (j < bm::set_sub_array_size); in combine_operation_or() 5582 } while (j < bm::set_sub_array_size); in combine_operation_xor() 5677 } while (j < bm::set_sub_array_size); in combine_operation_and() 5747 } while (j < bm::set_sub_array_size); in combine_operation_sub() [all …]
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H A D | bmconst.h | 94 const unsigned set_sub_array_size = set_array_size32; variable 99 const unsigned set_sub_total_bits = bm::set_sub_array_size * bm::gap_max_bits; 106 const id64_t set_total_blocks = id64_t(bm::set_top_array_size) * set_sub_array_size;
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H A D | bmaggregator.h | 529 } while (++j < bm::set_sub_array_size); in aggregator_pipeline_execute() 789 if (j == bm::set_sub_array_size-1) in combine_and_sub() 872 unsigned set_array_max = bm::set_sub_array_size; in find_first_and_sub() 934 return bm::set_sub_array_size; in find_effective_sub_block_size() 951 return bm::set_sub_array_size; in find_effective_sub_block_size() 961 if (max_size == bm::set_sub_array_size - 1) in find_effective_sub_block_size() 965 BM_ASSERT(max_size <= bm::set_sub_array_size); in find_effective_sub_block_size() 992 if (++j == bm::set_sub_array_size) in combine_or() 1049 if (++j == bm::set_sub_array_size) in combine_and() 1729 } while (++j < bm::set_sub_array_size); in combine_shift_right_and() [all …]
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H A D | bmalgo_impl.h | 736 block_idx += bm::set_sub_array_size; in distance_operation() 742 block_idx += bm::set_sub_array_size; in distance_operation() 747 for (j = 0; j < bm::set_sub_array_size; ++j,++block_idx) in distance_operation() 759 for (j = 0; j < bm::set_sub_array_size; ++j, ++block_idx) in distance_operation() 817 for (unsigned j = 0; j < bm::set_sub_array_size; j+=4) in distance_and_operation() 894 block_idx += bm::set_sub_array_size; in distance_operation_any() 901 block_idx += bm::set_sub_array_size; in distance_operation_any() 938 for (j = 0; j < bm::set_sub_array_size; ++j, ++block_idx) in distance_operation_any() 1765 j_to = bm::set_sub_array_size-1; in for_each_bit_block_range() 1789 } while (++j < bm::set_sub_array_size); in for_each_bit_block_range() [all …]
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H A D | bmfunc.h | 1840 j_to = bm::set_sub_array_size-1; in for_each_nzblock_range() 1872 } while (++j < bm::set_sub_array_size); in for_each_nzblock_range() 1895 size_type r = i * bm::set_sub_array_size; in for_each_nzblock() 1900 } while (++j < bm::set_sub_array_size); in for_each_nzblock() 1905 size_type r = i * bm::set_sub_array_size; in for_each_nzblock() 1980 } while (j < bm::set_sub_array_size); in for_each_nzblock() 2101 } while (j < bm::set_sub_array_size); in for_each_nzblock2() 2120 block_idx += bm::set_sub_array_size; in for_each_nzblock_if() 9364 for (i = 0; i < bm::set_sub_array_size; ++i) in block_ptr_array_range() 9372 if (i == bm::set_sub_array_size) in block_ptr_array_range() [all …]
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H A D | bmalgo.h | 222 size_type r = size_type(i) * bm::set_sub_array_size; in for_each_bit() 247 } while (j < bm::set_sub_array_size); in for_each_bit()
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H A D | bmintervals.h | 501 pos += bm::gap_max_bits * bm::set_sub_array_size; in find_interval_end() 537 } while (++j < bm::set_sub_array_size); in find_interval_end()
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H A D | bmserial.h | 2749 i += (bm::set_sub_array_size - j0) - 1; in serialize() 4010 const typename BV::size_type sb_max_bc = bm::set_sub_array_size * bm::gap_max_bits; in decode_arr_sblock() 4387 nb_i += (bm::set_sub_array_size - j0); in deserialize() 6829 bv_block_idx+=bm::set_sub_array_size-j; in finalize_target_vector() 6834 for (; j < bm::set_sub_array_size; ++j, ++bv_block_idx) in finalize_target_vector()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/bitset/stress_test/ |
H A D | stress64.cpp | 1843 rsi.resize(bm::set_sub_array_size*5); in RSIndexTest() 1889 unsigned bcount[bm::set_sub_array_size]; in RSIndexTest() 1890 unsigned sub_count1[bm::set_sub_array_size]; in RSIndexTest() 1907 rsi.resize(bm::set_sub_array_size*4); in RSIndexTest() 1909 rsi.set_total(bm::set_sub_array_size*4); in RSIndexTest() 1945 bc = rsi.count(bm::set_sub_array_size); in RSIndexTest() 1947 rbc = rsi.rcount(bm::set_sub_array_size); in RSIndexTest() 1950 bc = rsi.count(bm::set_sub_array_size+1); in RSIndexTest() 1952 rbc = rsi.rcount(bm::set_sub_array_size+1); in RSIndexTest() 1960 bc = rsi.count(bm::set_sub_array_size*3); in RSIndexTest() [all …]
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H A D | stress32.cpp | 2508 matr.resize(3, bm::set_sub_array_size); in DynamicMatrixTest() 2580 rsi.resize(bm::set_sub_array_size*5); in RSIndexTest() 2626 unsigned bcount[bm::set_sub_array_size]; in RSIndexTest() 2644 rsi.resize(bm::set_sub_array_size*4); in RSIndexTest() 2646 rsi.set_total(bm::set_sub_array_size*4); in RSIndexTest() 2682 bc = rsi.count(bm::set_sub_array_size); in RSIndexTest() 2684 rbc = rsi.rcount(bm::set_sub_array_size); in RSIndexTest() 2687 bc = rsi.count(bm::set_sub_array_size+1); in RSIndexTest() 2689 rbc = rsi.rcount(bm::set_sub_array_size+1); in RSIndexTest() 2697 bc = rsi.count(bm::set_sub_array_size*3); in RSIndexTest() [all …]
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