Home
last modified time | relevance | path

Searched refs:shortseq (Results 1 – 5 of 5) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/tests/python/
H A Dtest-RNA-pf_window.py16 shortseq = "UGGGAAUAGUCUCUUCCGAGUCUCGCGGGCGACGGGCGAUCUUCGAAAGUGGAAUCCGUA" variable
179 md.max_bp_span = len(shortseq)
180 md.window_size = len(shortseq)
184 fc = RNA.fold_compound(shortseq, md, RNA.OPTION_WINDOW)
188 fc2 = RNA.fold_compound(shortseq)
326 md.max_bp_span = len(shortseq)
327 md.window_size = len(shortseq)
334 fc2 = RNA.fold_compound(shortseq)
338 up_single = [ 0 for i in range(0, len(shortseq) + 1) ]
339 for i in range(1, len(shortseq) + 1):
[all …]
/dports/biology/viennarna/ViennaRNA-2.4.18/tests/python3/
H A Dtest-RNA-pf_window.py316 shortseq = "UGGGAAUAGUCUCUUCCGAGUCUCGCGGGCGACGGGCGAUCUUCGAAAGUGGAAUCCGUA"
179 md.max_bp_span = len(shortseq)
180 md.window_size = len(shortseq)
184 fc = RNA.fold_compound(shortseq, md, RNA.OPTION_WINDOW)
188 fc2 = RNA.fold_compound(shortseq)
326 md.max_bp_span = len(shortseq)
327 md.window_size = len(shortseq)
334 fc2 = RNA.fold_compound(shortseq)
338 up_single = [ 0 for i in range(0, len(shortseq) + 1) ]
339 for i in range(1, len(shortseq) + 1):
[all …]
/dports/biology/viennarna/ViennaRNA-2.4.18/tests/perl5/
H A Dtest-RNA-pf_window.pl22 my $shortseq = "UGGGAAUAGUCUCUUCCGAGUCUCGCGGGCGACGGGCGAUCUUCGAAAGUGGAAUCCGUA";
272 $md->{'max_bp_span'} = length($shortseq);
273 $md->{'window_size'} = length($shortseq);
277 $fc = new RNA::fold_compound($shortseq, $md, RNA::OPTION_WINDOW);
281 $fc2 = new RNA::fold_compound($shortseq);
418 $fc = new RNA::fold_compound($shortseq, $md, RNA::OPTION_WINDOW);
423 $fc2 = new RNA::fold_compound($shortseq);
427 my @p_single = (0) x (length($shortseq) + 1);
429 foreach my $i (1..length($shortseq)) {
430 foreach my $j ($i..length($shortseq)) {
[all …]
/dports/misc/rump/buildrump.sh-b914579/src/sys/netinet/
H A Ddccp_var.h116 u_char shortseq; /* use short seq number */ member
H A Ddccp_usrreq.c1301 if (!dp->shortseq) in dccp_output()
1312 if (!dp->shortseq) in dccp_output()
1321 if (!dp->shortseq) in dccp_output()
2325 dp->shortseq = 0;