Searched refs:shuff_max (Results 1 – 8 of 8) sorted by relevance
/dports/biology/fasta3/fasta-36.3.8/src/ |
H A D | initfa.c | 930 m_msp->shuff_max = MAX_RSTATS; in f_initenv() 931 m_msp->shuff_max_save = m_msp->shuff_max; in f_initenv() 1167 sscanf (optarg, "%d", &m_msg->shuff_max); in f_getopt() 1168 m_msg->shuff_max_save = m_msg->shuff_max; in f_getopt() 1412 m_msg->shuff_max_save = m_msg->shuff_max; in f_getarg() 1724 if (m_msp->shuff_max < 10) m_msp->shuff_max = MAX_RSTATS; in query_parm() 1730 else sscanf(qline,"%d",&m_msp->shuff_max); in query_parm() 1771 m_msg->shuff_max = 2000; in last_init() 1772 ppst->shuff_node = m_msg->shuff_max/fa_max_workers; in last_init() 1774 m_msg->shuff_max = m_msg->shuff_max_save; in last_init() [all …]
|
H A D | showrss.c | 47 fprintf(fp,"\n %s - %d shuffles; ",prog_func,m_msg->shuff_max); in showbest()
|
H A D | comp_lib9.c | 173 save_shuf(struct buf_head *lib_buf, int nitt, int shuff_max, int score_ix, 183 int shuff_max, int link_flag); 775 &stats, &rstats, m_msg.shuff_max, in main() 1063 nbest > 0 && nbest < m_msg.shuff_max) { in main() 1161 if (pst.zsflag > 20 && nbest >= m_msg.shuff_max) { in main() 1175 if (n_sig * 5 > m_msg.shuff_max) { in main() 1176 m_msg.shuff_max = n_sig*5; in main() 1177 if (m_msg.shuff_max > MAX_BEST/2) m_msg.shuff_max = MAX_BEST/2; in main() 1179 fprintf(stderr, " *** Cannot reallocate rstats[%d] ***\n",m_msg.shuff_max); in main() 2983 int shuff_max, int link_flag) { in init_beststats() argument [all …]
|
H A D | structs.h | 169 int shuff_max; /* number of shuffles to perform */ member
|
H A D | llgetaa.c | 307 if (m_msg.shuff_max > shuff_cnt) shuff_cnt = m_msg.shuff_max;
|
H A D | compacc2.c | 2457 if (rbuf_dp->frame == m_msp->nitt1 && t_qrbest > 0 && nqstats < m_msp->shuff_max) { in save_best() 2803 if (m_msp->qshuffle && nqstats < m_msp->shuff_max) { in save_best2() 2812 && nqstats < m_msp->shuff_max) { in save_best2() 2844 save_shuf(struct buf_head *lib_bhead_p, int nitt1, int shuff_max, int sc_ix, in save_shuf() argument 2893 if (nrstats < shuff_max ) { kstats = jstats = nrstats++; } in save_shuf() 2896 if (jstats >= shuff_max) goto done; in save_shuf() 3382 shuff_mult = (m_msp->shuff_max+1)/ndiff; in buf_shuf_seq() 3389 m_msp->shuff_max / (2 * fa_max_workers)); in buf_shuf_seq() 3458 save_shuf(lib_bhead_p,m_msp->nitt1,m_msp->shuff_max,ppst->score_ix,s_info); in buf_shuf_seq() 3493 save_shuf(RESULTS_BUF[i],m_msp->nitt1, m_msp->shuff_max, ppst->score_ix, s_info); in buf_shuf_seq() [all …]
|
H A D | compacc2e.c | 2465 if (rbuf_dp->frame == m_msp->nitt1 && t_qrbest > 0 && nqstats < m_msp->shuff_max) { in save_best() 2811 if (m_msp->qshuffle && nqstats < m_msp->shuff_max) { in save_best2() 2820 && nqstats < m_msp->shuff_max) { in save_best2() 2852 save_shuf(struct buf_head *lib_bhead_p, int nitt1, int shuff_max, int sc_ix, in save_shuf() argument 2901 if (nrstats < shuff_max ) { kstats = jstats = nrstats++; } in save_shuf() 2904 if (jstats >= shuff_max) goto done; in save_shuf() 3390 shuff_mult = (m_msp->shuff_max+1)/ndiff; in buf_shuf_seq() 3397 m_msp->shuff_max / (2 * fa_max_workers)); in buf_shuf_seq() 3466 save_shuf(lib_bhead_p,m_msp->nitt1,m_msp->shuff_max,ppst->score_ix,s_info); in buf_shuf_seq() 3501 save_shuf(RESULTS_BUF[i],m_msp->nitt1, m_msp->shuff_max, ppst->score_ix, s_info); in buf_shuf_seq() [all …]
|
/dports/biology/fasta3/fasta-36.3.8/doc/ |
H A D | fasta.options | 43 case 'k': m_msg->shuff_max
|