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Searched refs:shuff_max (Results 1 – 8 of 8) sorted by relevance

/dports/biology/fasta3/fasta-36.3.8/src/
H A Dinitfa.c930 m_msp->shuff_max = MAX_RSTATS; in f_initenv()
931 m_msp->shuff_max_save = m_msp->shuff_max; in f_initenv()
1167 sscanf (optarg, "%d", &m_msg->shuff_max); in f_getopt()
1168 m_msg->shuff_max_save = m_msg->shuff_max; in f_getopt()
1412 m_msg->shuff_max_save = m_msg->shuff_max; in f_getarg()
1724 if (m_msp->shuff_max < 10) m_msp->shuff_max = MAX_RSTATS; in query_parm()
1730 else sscanf(qline,"%d",&m_msp->shuff_max); in query_parm()
1771 m_msg->shuff_max = 2000; in last_init()
1772 ppst->shuff_node = m_msg->shuff_max/fa_max_workers; in last_init()
1774 m_msg->shuff_max = m_msg->shuff_max_save; in last_init()
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H A Dshowrss.c47 fprintf(fp,"\n %s - %d shuffles; ",prog_func,m_msg->shuff_max); in showbest()
H A Dcomp_lib9.c173 save_shuf(struct buf_head *lib_buf, int nitt, int shuff_max, int score_ix,
183 int shuff_max, int link_flag);
775 &stats, &rstats, m_msg.shuff_max, in main()
1063 nbest > 0 && nbest < m_msg.shuff_max) { in main()
1161 if (pst.zsflag > 20 && nbest >= m_msg.shuff_max) { in main()
1175 if (n_sig * 5 > m_msg.shuff_max) { in main()
1176 m_msg.shuff_max = n_sig*5; in main()
1177 if (m_msg.shuff_max > MAX_BEST/2) m_msg.shuff_max = MAX_BEST/2; in main()
1179 fprintf(stderr, " *** Cannot reallocate rstats[%d] ***\n",m_msg.shuff_max); in main()
2983 int shuff_max, int link_flag) { in init_beststats() argument
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H A Dstructs.h169 int shuff_max; /* number of shuffles to perform */ member
H A Dllgetaa.c307 if (m_msg.shuff_max > shuff_cnt) shuff_cnt = m_msg.shuff_max;
H A Dcompacc2.c2457 if (rbuf_dp->frame == m_msp->nitt1 && t_qrbest > 0 && nqstats < m_msp->shuff_max) { in save_best()
2803 if (m_msp->qshuffle && nqstats < m_msp->shuff_max) { in save_best2()
2812 && nqstats < m_msp->shuff_max) { in save_best2()
2844 save_shuf(struct buf_head *lib_bhead_p, int nitt1, int shuff_max, int sc_ix, in save_shuf() argument
2893 if (nrstats < shuff_max ) { kstats = jstats = nrstats++; } in save_shuf()
2896 if (jstats >= shuff_max) goto done; in save_shuf()
3382 shuff_mult = (m_msp->shuff_max+1)/ndiff; in buf_shuf_seq()
3389 m_msp->shuff_max / (2 * fa_max_workers)); in buf_shuf_seq()
3458 save_shuf(lib_bhead_p,m_msp->nitt1,m_msp->shuff_max,ppst->score_ix,s_info); in buf_shuf_seq()
3493 save_shuf(RESULTS_BUF[i],m_msp->nitt1, m_msp->shuff_max, ppst->score_ix, s_info); in buf_shuf_seq()
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H A Dcompacc2e.c2465 if (rbuf_dp->frame == m_msp->nitt1 && t_qrbest > 0 && nqstats < m_msp->shuff_max) { in save_best()
2811 if (m_msp->qshuffle && nqstats < m_msp->shuff_max) { in save_best2()
2820 && nqstats < m_msp->shuff_max) { in save_best2()
2852 save_shuf(struct buf_head *lib_bhead_p, int nitt1, int shuff_max, int sc_ix, in save_shuf() argument
2901 if (nrstats < shuff_max ) { kstats = jstats = nrstats++; } in save_shuf()
2904 if (jstats >= shuff_max) goto done; in save_shuf()
3390 shuff_mult = (m_msp->shuff_max+1)/ndiff; in buf_shuf_seq()
3397 m_msp->shuff_max / (2 * fa_max_workers)); in buf_shuf_seq()
3466 save_shuf(lib_bhead_p,m_msp->nitt1,m_msp->shuff_max,ppst->score_ix,s_info); in buf_shuf_seq()
3501 save_shuf(RESULTS_BUF[i],m_msp->nitt1, m_msp->shuff_max, ppst->score_ix, s_info); in buf_shuf_seq()
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/dports/biology/fasta3/fasta-36.3.8/doc/
H A Dfasta.options43 case 'k': m_msg->shuff_max