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Searched refs:sim_obj (Results 1 – 3 of 3) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/gumbel_params/
H A Dgumbel_params.cpp470 Sls::alp_sim sim_obj(&data_obj); in Run() local
474 gumbel_params.lambda = sim_obj.m_Lambda; in Run()
477 gumbel_params.K = sim_obj.m_K; in Run()
478 gumbel_params.K_error = sim_obj.m_KError; in Run()
480 gumbel_params.C = sim_obj.m_C; in Run()
481 gumbel_params.C_error = sim_obj.m_CError; in Run()
483 gumbel_params.sigma = sim_obj.m_Sigma; in Run()
486 gumbel_params.alpha_i = sim_obj.m_AlphaI; in Run()
489 gumbel_params.alpha_j = sim_obj.m_AlphaJ; in Run()
492 gumbel_params.ai = sim_obj.m_AI; in Run()
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/dports/biology/diamond/diamond-2.0.13/src/lib/alp/
H A Dsls_alignment_evaluer.cpp533 Sls::alp_sim sim_obj(&data_obj); in initGapped() local
564 sim_obj.m_G=alp_data::Tmin(sim_obj.m_G1,sim_obj.m_G2); in initGapped()
568 d_params.G=sim_obj.m_G; in initGapped()
569 d_params.G1=sim_obj.m_G1; in initGapped()
570 d_params.G2=sim_obj.m_G2; in initGapped()
575 d_params.K = sim_obj.m_K; in initGapped()
578 d_params.C = sim_obj.m_C; in initGapped()
590 d_params.a_I = sim_obj.m_AI; in initGapped()
593 d_params.a_J = sim_obj.m_AJ; in initGapped()
599 d_params.m_KSbs=sim_obj.m_KSbs; in initGapped()
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/dports/biology/mmseqs2/MMseqs2-13-45111/lib/alp/
H A Dsls_alignment_evaluer.cpp533 Sls::alp_sim sim_obj(&data_obj); in initGapped() local
564 sim_obj.m_G=alp_data::Tmin(sim_obj.m_G1,sim_obj.m_G2); in initGapped()
568 d_params.G=sim_obj.m_G; in initGapped()
569 d_params.G1=sim_obj.m_G1; in initGapped()
570 d_params.G2=sim_obj.m_G2; in initGapped()
575 d_params.K = sim_obj.m_K; in initGapped()
578 d_params.C = sim_obj.m_C; in initGapped()
590 d_params.a_I = sim_obj.m_AI; in initGapped()
593 d_params.a_J = sim_obj.m_AJ; in initGapped()
599 d_params.m_KSbs=sim_obj.m_KSbs; in initGapped()
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