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Searched refs:sintp (Results 1 – 25 of 42) sorted by relevance

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/dports/math/libpgmath/flang-d07daf3/runtime/flang/
H A Dinquire.c569 sintp = sint + 1; in ENTF90IO()
718 *sintp++ = *exist; in ENTF90IO()
764 *sintp++ = *recl; in ENTF90IO()
928 sintp = sint + 1; in ENTF90IO()
1123 *sintp++ = *recl; in ENTF90IO()
1764 sintp = sint + 1; in ENTF90IO()
1997 *sintp++ = *id; in ENTF90IO()
2003 *sintp++ = *pos; in ENTF90IO()
2274 sintp = sint + 1; in ENTF90IO()
2504 *sintp++ = *id; in ENTF90IO()
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/dports/biology/ncbi-toolkit/ncbi/biostruc/newvast/
H A Dvastchkid.c288 SeqIntPtr sintp = NULL; in ReplaceBioseqId() local
313 sintp = slp->data.ptrvalue; in ReplaceBioseqId()
314 if(sintp) { in ReplaceBioseqId()
315 sip_temp = sintp->id; in ReplaceBioseqId()
316 sintp->id = sip; in ReplaceBioseqId()
334 sintp = slp_mix->data.ptrvalue; in ReplaceBioseqId()
335 if(sintp) sintp->id = sip; in ReplaceBioseqId()
/dports/biology/ncbi-toolkit/ncbi/biostruc/
H A Dvastchkid.c285 SeqIntPtr sintp = NULL; in ReplaceBioseqId() local
310 sintp = slp->data.ptrvalue; in ReplaceBioseqId()
311 if(sintp) { in ReplaceBioseqId()
312 sip_temp = sintp->id; in ReplaceBioseqId()
313 sintp->id = sip; in ReplaceBioseqId()
331 sintp = slp_mix->data.ptrvalue; in ReplaceBioseqId()
332 if(sintp) sintp->id = sip; in ReplaceBioseqId()
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dblast_dust.c295 SeqIntPtr sintp; in s_SlpDust() local
330 sintp = SeqIntNew (); in s_SlpDust()
331 if (!sintp) in s_SlpDust()
338 sintp->id = SeqIdDup (id); in s_SlpDust()
339 sintp->from = reg->from; in s_SlpDust()
340 sintp->to = reg->to; in s_SlpDust()
342 (&vnp, SEQLOC_INT, sintp); in s_SlpDust()
348 slp->data.ptrvalue = (Pointer) sintp; in s_SlpDust()
H A Ddust.c603 SeqIntPtr sintp; in slpDust() local
637 sintp = SeqIntNew (); in slpDust()
638 if (!sintp) in slpDust()
645 sintp->id = SeqIdDup (id); in slpDust()
646 sintp->from = reg->from; in slpDust()
647 sintp->to = reg->to; in slpDust()
649 (vnp, SEQLOC_INT, sintp); in slpDust()
655 slp->data.ptrvalue = (Pointer) sintp; in slpDust()
H A Dtoporg.c6052 SeqIntPtr sintp; in FixSeqStrandOther() local
6069 sintp = (SeqIntPtr) slp->data.ptrvalue; in FixSeqStrandOther()
6070 if (sintp != NULL && sintp->strand == Seq_strand_other) { in FixSeqStrandOther()
6071 sintp->strand = Seq_strand_plus; in FixSeqStrandOther()
6566 SeqIntPtr sintp; in MapSegFeatToMaster() local
6669 sintp = (SeqIntPtr) slp->data.ptrvalue; in MapSegFeatToMaster()
6670 if (sintp != NULL) { in MapSegFeatToMaster()
6672 if (sintp->strand == Seq_strand_minus) { in MapSegFeatToMaster()
6673 sprintf (buf, "%ld..%ld", (long) sintp->to + 1, (long) sintp->from + 1); in MapSegFeatToMaster()
6675 sprintf (buf, "%ld..%ld", (long) sintp->from + 1, (long) sintp->to + 1); in MapSegFeatToMaster()
/dports/biology/ncbi-toolkit/ncbi/cn3d/
H A Dcn3dmatn.c283 SeqIntPtr sintp = NULL; in MediaHL() local
292 sintp = slp->data.ptrvalue; in MediaHL()
293 if(sintp == NULL) return; in MediaHL()
294 sip = sintp->id; in MediaHL()
/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dasn2all.c266 SeqIntPtr sintp; in MapLocationOntoDeltaParent() local
292 if (sintp != NULL) { in MapLocationOntoDeltaParent()
294 sintp->from = scontext->cumOffset + scontext->to - sintp->from; in MapLocationOntoDeltaParent()
295 sintp->to = scontext->cumOffset + scontext->to - sintp->to; in MapLocationOntoDeltaParent()
297 sintp->from = scontext->cumOffset - scontext->from + sintp->from; in MapLocationOntoDeltaParent()
298 sintp->to = scontext->cumOffset - scontext->from + sintp->to; in MapLocationOntoDeltaParent()
691 SeqIntPtr sintp; in AfpToSeqLoc() local
726 sintp = SeqIntNew (); in AfpToSeqLoc()
729 sintp->from = from - 1; in AfpToSeqLoc()
730 sintp->to = to - 1; in AfpToSeqLoc()
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H A Dfa2htgs.c281 SeqIntPtr sintp; in OffsetAndLinkSeqGraph() local
301 sintp = (SeqIntPtr) slp->data.ptrvalue; in OffsetAndLinkSeqGraph()
302 if (sintp != NULL) { in OffsetAndLinkSeqGraph()
303 sintp->from += len; in OffsetAndLinkSeqGraph()
304 sintp->to += len; in OffsetAndLinkSeqGraph()
305 sintp->id = SeqIdFree (sintp->id); in OffsetAndLinkSeqGraph()
306 sintp->id = SeqIdDup (bsp->id); in OffsetAndLinkSeqGraph()
H A Didcleanscan.c220 SeqIntPtr sintp; in DoGraphs() local
331 sintp = (SeqIntPtr) slocp->data.ptrvalue; in DoGraphs()
332 if (sintp != NULL) { in DoGraphs()
333 if (sintp->from != curroffset) { in DoGraphs()
334 …ntf (str, "SeqGraph (%ld) and SeqLit (%ld) start do not coincide", (long) sintp->from, (long) curr… in DoGraphs()
338 if (sintp->to != slp->length + curroffset - 1) { in DoGraphs()
339 …intf (str, "SeqGraph (%ld) and SeqLit (%ld) stop do not coincide", (long) sintp->to, (long) (slp->… in DoGraphs()
H A Dtbl2asn.c3182 if (sintp->from == 0 && sintp->to > bsp->length - 1) { in ReplaceOneRNA()
3773 SeqIntPtr sintp; in OffsetAndLinkSeqGraph() local
3794 if (sintp != NULL) { in OffsetAndLinkSeqGraph()
3795 sintp->from += len; in OffsetAndLinkSeqGraph()
3796 sintp->to += len; in OffsetAndLinkSeqGraph()
3797 sintp->id = SeqIdFree (sintp->id); in OffsetAndLinkSeqGraph()
5341 SeqIntPtr sintp; in ClearProtFeatStrand() local
6588 SeqIntPtr sintp; in ValidateAssemblyGapFeat() local
6598 if (sintp != NULL && sintp->from > 0 && sintp->to < bsp->length - 1) { in ValidateAssemblyGapFeat()
6599 (sintp->from)--; in ValidateAssemblyGapFeat()
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H A Dcleanasn.c1495 SeqIntPtr sintp; in LengthenLoc() local
1523 sintp->to += len_diff; in LengthenLoc()
1541 sintp = SeqIntNew (); in LengthenLoc()
1548 sintp->to = spp->point; in LengthenLoc()
2537 SeqIntPtr sintp; in CleanupLocation() local
2554 if (sintp != NULL) { in CleanupLocation()
11429 SeqIntPtr sintp; in SeqToAnticodon() local
11499 sintp->if_from = IntFuzzFree (sintp->if_from); in SeqToAnticodon()
11500 sintp->if_to = IntFuzzFree (sintp->if_to); in SeqToAnticodon()
11503 sintp->from = sintp->to - 2; in SeqToAnticodon()
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H A Dnps2gps.c1439 SeqIntPtr sintp; in InstantiateNCRNA() local
1709 sintp = (SeqIntPtr) slp->data.ptrvalue; in InstantiateNCRNA()
1710 if (sintp != NULL) { in InstantiateNCRNA()
1711 sintp->from -= offset; in InstantiateNCRNA()
1712 sintp->to -= offset; in InstantiateNCRNA()
1713 sintp->id = SeqIdFree (sintp->id); in InstantiateNCRNA()
1714 sintp->id = SeqIdDup (bsp->id); in InstantiateNCRNA()
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dasn2ff4.c570 SeqIntPtr sintp; in FlatVirtLoc() local
601 sidp = sintp-> id; in FlatVirtLoc()
634 SeqIntPtr sintp; in FlatLocElement() local
704 if (is_real_id(sintp-> id, this_sidp)){ in FlatLocElement()
705 if (sintp -> strand == 2) /* minus strand */ in FlatLocElement()
708 sintp -> from, sintp -> if_from ); in FlatLocElement()
710 if ( sintp -> to >0 && (sintp -> to != sintp -> from in FlatLocElement()
711 || sintp -> if_from || sintp -> if_to )){ in FlatLocElement()
714 sintp -> to, sintp -> if_to); in FlatLocElement()
722 if (sintp -> id){ in FlatLocElement()
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H A Dacerdapi.c55 SeqIntPtr sintp; in SeqGraphFromContig() local
88 sintp = SeqIntNew (); in SeqGraphFromContig()
89 sintp->from = 0; in SeqGraphFromContig()
90 sintp->to = bsp->length - 1; in SeqGraphFromContig()
91 sintp->id = SeqIdDup (bsp->id); in SeqGraphFromContig()
92 ValNodeAddPointer (&(sgp->loc), SEQLOC_INT, (Pointer) sintp); in SeqGraphFromContig()
H A Dasn2gnb6.c2226 SeqIntPtr sintp; in FlatVirtLoc() local
2241 sip = sintp->id; in FlatVirtLoc()
2514 SeqIntPtr sintp; in FlatLocElement() local
2538 sip = sintp->id; in FlatLocElement()
2545 FlatLocPoint (ajp, ffstring, sip, bsp->id, sintp->from, sintp->if_from); in FlatLocElement()
2547 (sintp->to != sintp->from || in FlatLocElement()
2552 FlatLocPoint (ajp, ffstring, NULL, bsp->id, sintp->to, sintp->if_to); in FlatLocElement()
5624 SeqIntPtr sintp; in RevCompDelta() local
5710 SeqIntPtr sintp; in FormatContigBlock() local
5737 if (sintp != NULL) { in FormatContigBlock()
[all …]
H A Dsqnutil1.c3489 SeqIntPtr sintp; in ParseAnticodon() local
3561 if (sintp->from > sintp->to) { in ParseAnticodon()
3563 sintp->from = sintp->to; in ParseAnticodon()
3678 if (sintp->from > sintp->to) { in ParseCodeBreak()
3680 sintp->from = sintp->to; in ParseCodeBreak()
3744 if (sintp->from > sintp->to) { in ParseCodeBreak()
3746 sintp->from = sintp->to; in ParseCodeBreak()
4275 SeqIntPtr sintp; in HandledGBQualOnRNA() local
12097 if (sintp->from > sintp->to) { in CleanUpSeqLoc()
12099 sintp->from = sintp->to; in CleanUpSeqLoc()
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H A Dsubutil.c724 SeqIntPtr sintp; in ReadjustSeqLitGraphs() local
3078 SeqIntPtr sintp; in AddIntToSeqLoc() local
3086 sintp = SeqIntNew(); in AddIntToSeqLoc()
3087 sintp->from = from; in AddIntToSeqLoc()
3088 sintp->to = to; in AddIntToSeqLoc()
3089 sintp->id = SeqIdDup(sip); in AddIntToSeqLoc()
3096 sintp->if_from = ifp; in AddIntToSeqLoc()
3103 sintp->if_to = ifp; in AddIntToSeqLoc()
4038 SeqIntPtr sintp; in AddPhrapGraphInternal() local
4072 sintp = SeqIntNew (); in AddPhrapGraphInternal()
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H A Dasn2gnb1.c4564 SeqIntPtr sintp; in asn2gnbk_setup_ex() local
4654 if (sintp != NULL && in asn2gnbk_setup_ex()
4655 sintp->from == 0 && in asn2gnbk_setup_ex()
4661 } else if (sintp != NULL && in asn2gnbk_setup_ex()
4662 sintp->from == 0 && in asn2gnbk_setup_ex()
4813 if (sintp != NULL) { in asn2gnbk_setup_ex()
4814 bsp = BioseqFind (sintp->id); in asn2gnbk_setup_ex()
4816 if (sintp->from < 0) { in asn2gnbk_setup_ex()
4817 sintp->from = 0; in asn2gnbk_setup_ex()
4821 if (sintp->to < 0) { in asn2gnbk_setup_ex()
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H A Dsqnutil2.c3375 sintp->from = 0; in ReadPhrapQualityFC()
4128 sintp->from = from; in AddNucToContig()
4129 sintp->to = to; in AddNucToContig()
4175 sintp->id = sip; in AddNucToContig()
6958 SeqIntPtr sintp; in AddIntervalToLocationEx() local
6977 sintp->to = stop; in AddIntervalToLocationEx()
7036 if (sintp->from == sintp->to) { in AddIntervalToLocationEx()
14787 sintp->from = SeqEdRemapCoord (salp, sintp->from, TRUE, seq_len); in SeqEdRemapSeqIntLoc()
14788 sintp->to = SeqEdRemapCoord (salp, sintp->to, FALSE, seq_len); in SeqEdRemapSeqIntLoc()
21665 SeqIntPtr sintp; in ValidateAssemblyGapFeat() local
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H A Dseqport.c5327 SeqIntPtr sintp; in SegRevComp() local
5350 sintp = (SeqIntPtr) slp->data.ptrvalue; in SegRevComp()
5351 if (sintp != NULL) { in SegRevComp()
5353 from = sintp->from; in SegRevComp()
5354 to = sintp->to; in SegRevComp()
5355 if (sintp->strand != Seq_strand_minus) { in SegRevComp()
5392 SeqIntPtr sintp; in DeltaRevComp() local
5411 sintp = (SeqIntPtr) slp->data.ptrvalue; in DeltaRevComp()
5412 if (sintp != NULL) { in DeltaRevComp()
5414 from = sintp->from; in DeltaRevComp()
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H A Dasn2gnb4.c5326 SeqIntPtr sintp; in FF_asn2gb_www_featkey_Ex() local
5352 if (sintp != NULL) { in FF_asn2gb_www_featkey_Ex()
5353 ffrom = sintp->from + 1; in FF_asn2gb_www_featkey_Ex()
5354 fto = sintp->to + 1; in FF_asn2gb_www_featkey_Ex()
5355 sip = sintp->id; in FF_asn2gb_www_featkey_Ex()
6032 SeqIntPtr sintp; in GetOverlappingGeneInEntity() local
6048 sint.from = sintp->from; in GetOverlappingGeneInEntity()
6049 sint.to = sintp->to; in GetOverlappingGeneInEntity()
6050 sint.id = sintp->id; in GetOverlappingGeneInEntity()
6051 sint.if_from = sintp->if_from; in GetOverlappingGeneInEntity()
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/dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/
H A Dcddutil.c957 SeqIntPtr sintp; in CddHasConsensus() local
964 if (!sintp) { in CddHasConsensus()
1179 sintp->from = k; in CddCheckForRepeats()
1180 sintp->to = l; in CddCheckForRepeats()
2817 SeqIntPtr sintp; in CddAssignProfileRange() local
2836 sintp->to = iMax; in CddAssignProfileRange()
5117 for (i=sintp->from;i<=sintp->to;i++) { in CddGetFeatLocList()
5179 if (sintp->from < 0 || sintp->to < 0) return(INT4_MAX); in CddSeqLocInExpAlign()
5180 for (i=sintp->from;i<=sintp->to;i++) { in CddSeqLocInExpAlign()
5240 sintp->from = ali[sintp->from]; in CddRelocateSeqLoc()
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/dports/biology/ncbi-toolkit/ncbi/desktop/
H A Dcdrgn.c2506 SeqIntPtr sintp; in LengthenLocation() local
2529 if (sintp->from - len_diff >= 0) { in LengthenLocation()
2530 sintp->from -= len_diff; in LengthenLocation()
2534 bsp = BioseqFind (sintp->id); in LengthenLocation()
2536 sintp->to += len_diff; in LengthenLocation()
2554 sintp = SeqIntNew (); in LengthenLocation()
2555 sintp->id = SeqIdDup (spp->id); in LengthenLocation()
2556 sintp->strand = spp->strand; in LengthenLocation()
2561 sintp->to = spp->point; in LengthenLocation()
2563 sintp->from = spp->point; in LengthenLocation()
[all …]
/dports/biology/ncbi-toolkit/ncbi/sequin/
H A Dsequin7.c1527 SeqIntPtr sintp; in OffsetAndLinkSeqGraph() local
1548 if (sintp != NULL) { in OffsetAndLinkSeqGraph()
1549 sintp->from += len; in OffsetAndLinkSeqGraph()
1550 sintp->to += len; in OffsetAndLinkSeqGraph()
1551 sintp->id = SeqIdFree (sintp->id); in OffsetAndLinkSeqGraph()
5970 SeqIntPtr sintp; in ReadjustSingleBaseFeatures() local
5984 if (sintp != NULL) { in ReadjustSingleBaseFeatures()
5985 sintp->from = 0; in ReadjustSingleBaseFeatures()
5998 if (sintp != NULL) { in ReadjustSingleBaseFeatures()
8748 SeqIntPtr sintp; in FixLastExonLocCallback() local
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