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Searched refs:smstr (Results 1 – 22 of 22) sorted by relevance

/dports/biology/fasta/fasta/
H A Dpscore.c32 char smstr[40], *smptr; variable
66 strncpy(smstr,"BLOSUM50",sizeof(smstr));
67 smptr=smstr;
75 case 's': strncpy(smstr,optarg,sizeof(smstr));
76 smptr=smstr;
93 if (dnaseq == 0 ) smptr=smstr;
106 strncpy(smstr,"DNA",sizeof(smstr));
107 smptr = smstr;
H A Dbestscor.c35 char smstr[40], *smptr; variable
84 strncpy(smstr,"BLOSUM50",sizeof(smstr));
85 smptr=smstr;
93 case 's': strncpy(smstr,optarg,sizeof(smstr));
94 smptr=smstr;
106 if (dnaseq == 0 ) smptr=smstr;
120 strncpy(smstr,"DNA",sizeof(smstr));
121 smptr = smstr;
H A Dlalign2.c355 strncpy(smstr,"BL50",sizeof(smstr)); in initenv()
356 smptr=smstr; in initenv()
413 strncpy(smstr, "DNA",sizeof(smstr)); in initenv()
415 strncpy(smstr, "DNA32",sizeof(smstr)); in initenv()
417 strncpy(smstr, "DNA13",sizeof(smstr)); in initenv()
429 strncpy (smstr, optarg, sizeof(smstr)); in initenv()
430 smstr[sizeof(smstr)-1]='\0'; in initenv()
455 smstr[0]='R'; in initenv()
468 strncpy(smstr,"DNA",sizeof(smstr)); in resetp()
471 smstr[0]='R'; in resetp()
[all …]
H A Dalign.c30 extern int standard_pam(char *smstr, int **pam,
85 char smstr[QFILE_SIZE]; variable
211 strncpy(smstr,"BLOSUM50",sizeof(smstr)); in initenv()
212 smptr=smstr; in initenv()
248 strncpy(smstr,optarg,sizeof(smstr)); in initenv()
249 smstr[sizeof(smstr)-1]='\0'; in initenv()
250 if (!standard_pam(smstr,&pam,&gdelval,&ggapval,del_set,gap_set) in initenv()
269 smptr=smstr; in initenv()
287 if (strlen(smstr)>0) in resetp()
289 strncpy(smstr,"DNA",sizeof(smstr)); in resetp()
[all …]
H A Dscore_al.c80 char smstr[QFILE_SIZE]; variable
254 strncpy(smstr,"BLOSUM50",sizeof(smstr));
255 smptr=smstr;
288 case 's': strncpy(smstr,optarg,sizeof(smstr));
289 smptr = smstr;
293 else strncpy(smstr,"BLOSUM50",sizeof(smstr));
308 smptr=smstr;
325 if (strlen(smstr)>0)
327 strncpy(smstr,"DNA",sizeof(smstr));
328 smptr = smstr;
H A Dprss.c106 char smstr[QFILE_SIZE]; variable
364 strncpy(smstr,"BLOSUM50",sizeof(smstr));
365 smptr = smstr;
380 strncpy(smstr,"DNA",sizeof(smstr));
381 smptr=smstr;
396 case 's': strncpy(smstr,optarg,sizeof(smstr));
397 smptr=smstr;
409 else smptr=smstr;
H A Dapam.c160 standard_pam(char *smstr, int **pam, in standard_pam() argument
166 if (strcmp(smstr,std_pam_p->abbrev)==0) { in standard_pam()
167 strncpy(smstr,std_pam_p->name,6); in standard_pam()
168 smstr[6]='\0'; in standard_pam()
H A Drelate.c70 char *libenv, *aaenv, *smptr, smstr[QFILE_SIZE]; variable
192 strncpy(smstr,"BL50",sizeof(smstr));
193 smptr = smstr;
202 smptr=smstr;
H A Dprdf.c161 char smstr[QFILE_SIZE]; variable
429 strncpy(smstr,"BLOSUM50",sizeof(smstr));
458 strncpy(smstr,"DNA",sizeof(smstr));
459 smptr = smstr;
471 case 's': strncpy(smstr,optarg,sizeof(smstr));
472 smptr=smstr;
487 else smptr = smstr;
H A Dssearch.c207 char smstr[QFILE_SIZE], sdstr[QFILE_SIZE]; variable
589 strncpy(sdstr,"BLOSUM50",sizeof(smstr));
655 case 's': strncpy(smstr,optarg,sizeof(smstr));
656 if (initpam(smstr)) {
659 smptr = smstr;
701 if (strlen(smstr)>0)
703 strncpy(sdstr,"DNA",sizeof(smstr));
H A Dfffasta.c388 char smstr[QFILE_SIZE], sdstr[QFILE_SIZE]; variable
1170 strncpy(smstr,optarg,sizeof(smstr));
1171 if (initpam(smstr)) {
1174 smptr = smstr;
1254 if (strlen(smstr)>0)
1256 strncpy(sdstr,"DNA",sizeof(smstr));
H A Drandlib.c56 char smstr[QFILE_SIZE]; variable
H A Dcrandseq.c52 char smstr[QFILE_SIZE]; variable
H A Drandseq.c50 char smstr[QFILE_SIZE]; variable
/dports/games/crrcsim/crrcsim-0.9.13/src/mod_fdm/
H A Dxmlmodelfile.cpp195 TSimInputs::eSteeringMap GetSteering(std::string smstr) in GetSteering() argument
197 if (smstr == "AILERON") in GetSteering()
199 else if (smstr == "ELEVATOR") in GetSteering()
201 else if (smstr == "RUDDER") in GetSteering()
203 else if (smstr == "THROTTLE") in GetSteering()
205 else if (smstr == "FLAP") in GetSteering()
207 else if (smstr == "SPOILER") in GetSteering()
209 else if (smstr == "RETRACT") in GetSteering()
211 else if (smstr == "PITCH") in GetSteering()
213 else if (smstr == "NOTHING") in GetSteering()
[all …]
H A Dxmlmodelfile.h94 TSimInputs::eSteeringMap GetSteering(std::string smstr);
/dports/biology/fasta3/fasta-36.3.8/src/
H A Dapam.c49 pam_opts(char *smstr, struct pstruct *ppst) { in pam_opts() argument
55 if ((bp=strchr(smstr,'-'))!=NULL) { in pam_opts()
64 else if ((bp=strchr(smstr,'+'))!=NULL) { in pam_opts()
242 standard_pam(char *smstr, struct pstruct *ppst, int del_set, int gap_set) { in standard_pam() argument
246 pam_opts(smstr, ppst); in standard_pam()
249 if (strcmp(smstr,std_pam_p->abbrev)==0) { in standard_pam()
H A Dinitfa.c138 char *smstr; member
521 extern int standard_pam(char *smstr, struct pstruct *ppst,
597 SAFE_STRNCPY(ppst->pamfile,pgm_def.smstr,MAX_FN); in h_init()
1235 SAFE_STRNCPY(ppst->pamfile,pgm_def_arr[pgm_id].smstr,MAX_FN); in f_getopt()
H A Dprint_pssm.c58 int standard_pam(char *smstr, struct pstruct *ppst, int del_set, int gap_set);
/dports/devel/stack/stack-2.7.3/_cabal_deps/ed25519-0.0.5.0/src/Crypto/Sign/
H A DEd25519.hs307 unsafePerformIO . SU.unsafeUseAsCStringLen xs $ \(smstr,smlen) ->
312 c_crypto_sign_open pout pmlen smstr (fromIntegral smlen) ppk
/dports/biology/fasta3/fasta-36.3.8/doc/
H A Dfasta.options50 case 's': standard_pam(smstr); ppst->pamoff=atoi(bp+1);
/dports/lang/onyx/onyx-5.1.2/lib/libonyx/src/
H A Dsystemdict.c8046 char *instr, *inend, *smstr, *smend; in systemdict_offset() local
8063 smstr = nxo_string_get(submatch); in systemdict_offset()
8064 smend = &smstr[nxo_string_len_get(submatch)]; in systemdict_offset()
8068 if (smstr < instr || smstr >= inend || smend > inend) in systemdict_offset()
8075 nxo_integer_new(input, (cw_nxoi_t) (smstr - instr)); in systemdict_offset()