/dports/biology/fasta/fasta/ |
H A D | pscore.c | 32 char smstr[40], *smptr; variable 66 strncpy(smstr,"BLOSUM50",sizeof(smstr)); 67 smptr=smstr; 75 case 's': strncpy(smstr,optarg,sizeof(smstr)); 76 smptr=smstr; 93 if (dnaseq == 0 ) smptr=smstr; 106 strncpy(smstr,"DNA",sizeof(smstr)); 107 smptr = smstr;
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H A D | bestscor.c | 35 char smstr[40], *smptr; variable 84 strncpy(smstr,"BLOSUM50",sizeof(smstr)); 85 smptr=smstr; 93 case 's': strncpy(smstr,optarg,sizeof(smstr)); 94 smptr=smstr; 106 if (dnaseq == 0 ) smptr=smstr; 120 strncpy(smstr,"DNA",sizeof(smstr)); 121 smptr = smstr;
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H A D | lalign2.c | 355 strncpy(smstr,"BL50",sizeof(smstr)); in initenv() 356 smptr=smstr; in initenv() 413 strncpy(smstr, "DNA",sizeof(smstr)); in initenv() 415 strncpy(smstr, "DNA32",sizeof(smstr)); in initenv() 417 strncpy(smstr, "DNA13",sizeof(smstr)); in initenv() 429 strncpy (smstr, optarg, sizeof(smstr)); in initenv() 430 smstr[sizeof(smstr)-1]='\0'; in initenv() 455 smstr[0]='R'; in initenv() 468 strncpy(smstr,"DNA",sizeof(smstr)); in resetp() 471 smstr[0]='R'; in resetp() [all …]
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H A D | align.c | 30 extern int standard_pam(char *smstr, int **pam, 85 char smstr[QFILE_SIZE]; variable 211 strncpy(smstr,"BLOSUM50",sizeof(smstr)); in initenv() 212 smptr=smstr; in initenv() 248 strncpy(smstr,optarg,sizeof(smstr)); in initenv() 249 smstr[sizeof(smstr)-1]='\0'; in initenv() 250 if (!standard_pam(smstr,&pam,&gdelval,&ggapval,del_set,gap_set) in initenv() 269 smptr=smstr; in initenv() 287 if (strlen(smstr)>0) in resetp() 289 strncpy(smstr,"DNA",sizeof(smstr)); in resetp() [all …]
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H A D | score_al.c | 80 char smstr[QFILE_SIZE]; variable 254 strncpy(smstr,"BLOSUM50",sizeof(smstr)); 255 smptr=smstr; 288 case 's': strncpy(smstr,optarg,sizeof(smstr)); 289 smptr = smstr; 293 else strncpy(smstr,"BLOSUM50",sizeof(smstr)); 308 smptr=smstr; 325 if (strlen(smstr)>0) 327 strncpy(smstr,"DNA",sizeof(smstr)); 328 smptr = smstr;
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H A D | prss.c | 106 char smstr[QFILE_SIZE]; variable 364 strncpy(smstr,"BLOSUM50",sizeof(smstr)); 365 smptr = smstr; 380 strncpy(smstr,"DNA",sizeof(smstr)); 381 smptr=smstr; 396 case 's': strncpy(smstr,optarg,sizeof(smstr)); 397 smptr=smstr; 409 else smptr=smstr;
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H A D | apam.c | 160 standard_pam(char *smstr, int **pam, in standard_pam() argument 166 if (strcmp(smstr,std_pam_p->abbrev)==0) { in standard_pam() 167 strncpy(smstr,std_pam_p->name,6); in standard_pam() 168 smstr[6]='\0'; in standard_pam()
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H A D | relate.c | 70 char *libenv, *aaenv, *smptr, smstr[QFILE_SIZE]; variable 192 strncpy(smstr,"BL50",sizeof(smstr)); 193 smptr = smstr; 202 smptr=smstr;
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H A D | prdf.c | 161 char smstr[QFILE_SIZE]; variable 429 strncpy(smstr,"BLOSUM50",sizeof(smstr)); 458 strncpy(smstr,"DNA",sizeof(smstr)); 459 smptr = smstr; 471 case 's': strncpy(smstr,optarg,sizeof(smstr)); 472 smptr=smstr; 487 else smptr = smstr;
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H A D | ssearch.c | 207 char smstr[QFILE_SIZE], sdstr[QFILE_SIZE]; variable 589 strncpy(sdstr,"BLOSUM50",sizeof(smstr)); 655 case 's': strncpy(smstr,optarg,sizeof(smstr)); 656 if (initpam(smstr)) { 659 smptr = smstr; 701 if (strlen(smstr)>0) 703 strncpy(sdstr,"DNA",sizeof(smstr));
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H A D | fffasta.c | 388 char smstr[QFILE_SIZE], sdstr[QFILE_SIZE]; variable 1170 strncpy(smstr,optarg,sizeof(smstr)); 1171 if (initpam(smstr)) { 1174 smptr = smstr; 1254 if (strlen(smstr)>0) 1256 strncpy(sdstr,"DNA",sizeof(smstr));
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H A D | randlib.c | 56 char smstr[QFILE_SIZE]; variable
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H A D | crandseq.c | 52 char smstr[QFILE_SIZE]; variable
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H A D | randseq.c | 50 char smstr[QFILE_SIZE]; variable
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/dports/games/crrcsim/crrcsim-0.9.13/src/mod_fdm/ |
H A D | xmlmodelfile.cpp | 195 TSimInputs::eSteeringMap GetSteering(std::string smstr) in GetSteering() argument 197 if (smstr == "AILERON") in GetSteering() 199 else if (smstr == "ELEVATOR") in GetSteering() 201 else if (smstr == "RUDDER") in GetSteering() 203 else if (smstr == "THROTTLE") in GetSteering() 205 else if (smstr == "FLAP") in GetSteering() 207 else if (smstr == "SPOILER") in GetSteering() 209 else if (smstr == "RETRACT") in GetSteering() 211 else if (smstr == "PITCH") in GetSteering() 213 else if (smstr == "NOTHING") in GetSteering() [all …]
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H A D | xmlmodelfile.h | 94 TSimInputs::eSteeringMap GetSteering(std::string smstr);
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/dports/biology/fasta3/fasta-36.3.8/src/ |
H A D | apam.c | 49 pam_opts(char *smstr, struct pstruct *ppst) { in pam_opts() argument 55 if ((bp=strchr(smstr,'-'))!=NULL) { in pam_opts() 64 else if ((bp=strchr(smstr,'+'))!=NULL) { in pam_opts() 242 standard_pam(char *smstr, struct pstruct *ppst, int del_set, int gap_set) { in standard_pam() argument 246 pam_opts(smstr, ppst); in standard_pam() 249 if (strcmp(smstr,std_pam_p->abbrev)==0) { in standard_pam()
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H A D | initfa.c | 138 char *smstr; member 521 extern int standard_pam(char *smstr, struct pstruct *ppst, 597 SAFE_STRNCPY(ppst->pamfile,pgm_def.smstr,MAX_FN); in h_init() 1235 SAFE_STRNCPY(ppst->pamfile,pgm_def_arr[pgm_id].smstr,MAX_FN); in f_getopt()
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H A D | print_pssm.c | 58 int standard_pam(char *smstr, struct pstruct *ppst, int del_set, int gap_set);
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/dports/devel/stack/stack-2.7.3/_cabal_deps/ed25519-0.0.5.0/src/Crypto/Sign/ |
H A D | Ed25519.hs | 307 unsafePerformIO . SU.unsafeUseAsCStringLen xs $ \(smstr,smlen) -> 312 c_crypto_sign_open pout pmlen smstr (fromIntegral smlen) ppk
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/dports/biology/fasta3/fasta-36.3.8/doc/ |
H A D | fasta.options | 50 case 's': standard_pam(smstr); ppst->pamoff=atoi(bp+1);
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/dports/lang/onyx/onyx-5.1.2/lib/libonyx/src/ |
H A D | systemdict.c | 8046 char *instr, *inend, *smstr, *smend; in systemdict_offset() local 8063 smstr = nxo_string_get(submatch); in systemdict_offset() 8064 smend = &smstr[nxo_string_len_get(submatch)]; in systemdict_offset() 8068 if (smstr < instr || smstr >= inend || smend > inend) in systemdict_offset() 8075 nxo_integer_new(input, (cw_nxoi_t) (smstr - instr)); in systemdict_offset()
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