/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/util/ |
H A D | MysqlMultiTableAssemblyAdapter.h | 59 …terator<U2AssemblyRead> *getReads(const U2Region ®ion, U2OpStatus &os, bool sortedHint = false); 173 …U2DbiIterator<U2AssemblyRead> *> &iterators, const QVector<QByteArray> &idExtras, bool sortedHint); 187 bool sortedHint; variable
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H A D | MysqlMultiTableAssemblyAdapter.cpp | 166 …ad> *MysqlMultiTableAssemblyAdapter::getReads(const U2Region &r, U2OpStatus &os, bool sortedHint) { in getReads() argument 170 iterators << a->singleTableAdapter->getReads(r, os, sortedHint); in getReads() 174 return new MysqlMtaReadsIterator(iterators, idExtras, sortedHint); in getReads() 841 : iterators(i), currentRange(0), idExtras(ie), sortedHint(sorted) { in MysqlMtaReadsIterator() 850 if (sortedHint) { in hasNext() 875 if (sortedHint) { in next() 916 if (sortedHint) { in peek()
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H A D | MysqlSingleTableAssemblyAdapter.h | 49 …2DbiIterator<U2AssemblyRead> *getReads(const U2Region &r, U2OpStatus &os, bool sortedHint = false);
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H A D | MysqlSingleTableAssemblyAdapter.cpp | 153 …d> *MysqlSingleTableAssemblyAdapter::getReads(const U2Region &r, U2OpStatus &os, bool sortedHint) { in getReads() argument 156 …ery> q(new U2SqlQuery(qStr.arg(readsTable).arg(rangeConditionCheck) + (sortedHint ? SORTED_READS :… in getReads()
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/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/sqlite_dbi/assembly/ |
H A D | MultiTableAssemblyAdapter.h | 58 …2DbiIterator<U2AssemblyRead> *getReads(const U2Region &r, U2OpStatus &os, bool sortedHint = false); 182 …U2DbiIterator<U2AssemblyRead> *> &iterators, const QVector<QByteArray> &idExtras, bool sortedHint); 196 bool sortedHint; variable
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H A D | MultiTableAssemblyAdapter.cpp | 303 …blyRead> *MultiTableAssemblyAdapter::getReads(const U2Region &r, U2OpStatus &os, bool sortedHint) { in getReads() argument 306 iterators << a->singleTableAdapter->getReads(r, os, sortedHint); in getReads() 315 return new MTAReadsIterator(iterators, idExtras, sortedHint); in getReads() 766 : iterators(i), currentRange(0), idExtras(ie), sortedHint(sorted) { in MTAReadsIterator() 775 if (sortedHint) { in hasNext() 800 if (sortedHint) { in next() 841 if (sortedHint) { in peek()
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H A D | RTreeAssemblyAdapter.cpp | 95 …AssemblyRead> *RTreeAssemblyAdapter::getReads(const U2Region &r, U2OpStatus &os, bool sortedHint) { in getReads() argument 99 if (sortedHint) { in getReads()
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H A D | RTreeAssemblyAdapter.h | 44 …2DbiIterator<U2AssemblyRead> *getReads(const U2Region &r, U2OpStatus &os, bool sortedHint = false);
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H A D | SingleTableAssemblyAdapter.cpp | 140 …lyRead> *SingleTableAssemblyAdapter::getReads(const U2Region &r, U2OpStatus &os, bool sortedHint) { in getReads() argument 142 if (sortedHint) { in getReads()
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H A D | SingleTableAssemblyAdapter.h | 45 …2DbiIterator<U2AssemblyRead> *getReads(const U2Region &r, U2OpStatus &os, bool sortedHint = false);
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/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/util/ |
H A D | AssemblyAdapter.h | 56 …Iterator<U2AssemblyRead> *getReads(const U2Region &r, U2OpStatus &os, bool sortedHint = false) = 0;
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/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/dbi/ |
H A D | U2AssemblyDbi.h | 123 …tReads(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os, bool sortedHint = false) = 0;
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/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/ |
H A D | MysqlAssemblyDbi.h | 56 … *getReads(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os, bool sortedHint = false);
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H A D | MysqlAssemblyDbi.cpp | 138 …mblyDbi::getReads(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os, bool sortedHint) { in getReads() argument 142 return a->getReads(r, os, sortedHint); in getReads()
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/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/sqlite_dbi/ |
H A D | SQLiteAssemblyDbi.h | 54 … *getReads(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os, bool sortedHint = false);
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H A D | SQLiteAssemblyDbi.cpp | 134 …mblyDbi::getReads(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os, bool sortedHint) { in getReads() argument 138 return a->getReads(r, os, sortedHint); in getReads()
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/dports/biology/ugene/ugene-40.1/src/plugins/dbi_bam/src/ |
H A D | Dbi.h | 144 … *getReads(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os, bool sortedHint = false);
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H A D | SamtoolsBasedDbi.h | 108 … *getReads(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os, bool sortedHint = false);
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