| /dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/smsd/algorithm/single/ |
| H A D | SingleMapping.java | 123 for (IAtom sourceAtom : source.atoms()) { in setSourceSingleAtomMap()
124 IQueryAtom smartAtom = (IQueryAtom) sourceAtom; in setSourceSingleAtomMap()
129 mapAtoms.put(sourceAtom, targetAtom); in setSourceSingleAtomMap()
137 … if (!Objects.equals(targetAtom.getFormalCharge(), sourceAtom.getFormalCharge())) { in setSourceSingleAtomMap()
153 for (IAtom sourceAtom : source.atoms()) { in setSourceSingleAtomMap()
154 if ((removeHydrogen && !sourceAtom.getSymbol().equals("H")) || (!removeHydrogen)) { in setSourceSingleAtomMap()
157 if (sourceAtom.getSymbol().equalsIgnoreCase(targetAtom.getSymbol())) { in setSourceSingleAtomMap()
158 mapAtoms.put(sourceAtom, targetAtom); in setSourceSingleAtomMap()
166 … if (!Objects.equals(targetAtom.getFormalCharge(), sourceAtom.getFormalCharge())) { in setSourceSingleAtomMap()
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| H A D | SingleMappingHandler.java | 138 IAtom sourceAtom = map.getKey(); in setAllMapping() local
140 atomMappings.put(source.indexOf(sourceAtom), target.indexOf(targetAtom)); in setAllMapping()
157 IAtom sourceAtom = map.getKey(); in setAllAtomMapping() local
159 atomMappings.put(sourceAtom, targetAtom); in setAllAtomMapping()
|
| /dports/science/cdk/cdk-cdk-2.3/legacy/src/test/java/org/openscience/cdk/smsd/tools/ |
| H A D | BondEnergiesTest.java | 49 IAtom sourceAtom = new Atom("C"); in testGetEnergies() local
54 Integer result = instance.getEnergies(sourceAtom, targetAtom, bondOrder); in testGetEnergies()
|
| /dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/smsd/tools/ |
| H A D | BondEnergies.java | 244 public int getEnergies(IAtom sourceAtom, IAtom targetAtom, Order bondOrder) { in getEnergies() argument
251 …if ((atom1.equalsIgnoreCase(sourceAtom.getSymbol()) && atom2.equalsIgnoreCase(targetAtom.getSymbol… in getEnergies()
252 || (atom2.equalsIgnoreCase(sourceAtom.getSymbol()) && atom1 in getEnergies()
271 public int getEnergies(String sourceAtom, String targetAtom, Order bondOrder) { in getEnergies() argument
278 if ((atom1.equalsIgnoreCase(sourceAtom) && atom2.equalsIgnoreCase(targetAtom)) in getEnergies()
279 || (atom2.equalsIgnoreCase(sourceAtom) && atom1.equalsIgnoreCase(targetAtom))) { in getEnergies()
|
| /dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/smsd/algorithm/mcsplus/ |
| H A D | MCSPlusHandler.java | 155 IAtom sourceAtom = null; in setAllAtomMapping() local
158 sourceAtom = source.getAtom(iIndex); in setAllAtomMapping()
160 atomMappings.put(sourceAtom, targetAtom); in setAllAtomMapping()
|
| /dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/smsd/algorithm/rgraph/ |
| H A D | CDKSubGraphHandler.java | 216 IAtom sourceAtom = null; in setAllAtomMapping() local
219 sourceAtom = source.getAtom(iIndex); in setAllAtomMapping()
221 atomMappings.put(sourceAtom, targetAtom); in setAllAtomMapping()
|
| H A D | CDKMCSHandler.java | 214 IAtom sourceAtom = null; in setAllAtomMapping() local
217 sourceAtom = source.getAtom(iIndex); in setAllAtomMapping()
219 atomMappings.put(sourceAtom, targetAtom); in setAllAtomMapping()
|
| /dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/io/inchi/ |
| H A D | INChIContentProcessorTool.java | 119 IAtom sourceAtom = container.getAtom(source - 1); in processConnections() local
120 … bondToAdd = container.getBuilder().newInstance(IBond.class, sourceAtom, targetAtom, in processConnections()
|
| /dports/science/cdk/cdk-cdk-2.3/misc/extra/src/main/java/org/openscience/cdk/io/ |
| H A D | INChIContentProcessorTool.java | 117 IAtom sourceAtom = container.getAtom(source - 1); in processConnections() local
118 … bondToAdd = container.getBuilder().newInstance(IBond.class, sourceAtom, targetAtom, in processConnections()
|
| /dports/www/firefox-legacy/firefox-52.8.0esr/js/src/builtin/ |
| H A D | RegExp.cpp | 337 RootedAtom sourceAtom(cx); in regexp_compile_impl() local
345 sourceAtom = g->getSource(); in regexp_compile_impl()
350 regexp->initIgnoringLastIndex(sourceAtom, flags); in regexp_compile_impl()
432 RootedAtom sourceAtom(cx); in regexp_construct() local
439 sourceAtom = g->getSource(); in regexp_construct()
470 if (!CheckPatternSyntax(cx, sourceAtom, flagsArg)) in regexp_construct()
476 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct()
537 RootedAtom sourceAtom(cx, rx->getSource()); in regexp_construct_raw_flags() local
560 RootedAtom sourceAtom(cx); in regexp_clone() local
566 sourceAtom = g->getSource(); in regexp_clone()
[all …]
|
| /dports/lang/spidermonkey60/firefox-60.9.0/js/src/builtin/ |
| H A D | RegExp.cpp | 325 RootedAtom sourceAtom(cx); in regexp_compile_impl() local
332 sourceAtom = shared->getSource(); in regexp_compile_impl()
337 regexp->initIgnoringLastIndex(sourceAtom, flags); in regexp_compile_impl()
412 RootedAtom sourceAtom(cx); in regexp_construct() local
419 sourceAtom = shared->getSource(); in regexp_construct()
452 shared = CheckPatternSyntax(cx, sourceAtom, flagsArg); in regexp_construct()
458 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct()
514 RootedAtom sourceAtom(cx, AtomizeString(cx, args[0].toString())); in regexp_construct_raw_flags() local
515 if (!sourceAtom) return false; in regexp_construct_raw_flags()
525 regexp->initAndZeroLastIndex(sourceAtom, RegExpFlag(flags), cx); in regexp_construct_raw_flags()
|
| /dports/databases/mongodb36/mongodb-src-r3.6.23/src/third_party/mozjs-45/extract/js/src/builtin/ |
| H A D | RegExp.cpp | 257 RootedAtom sourceAtom(cx); in regexp_compile_impl() local
265 sourceAtom = g->getSource(); in regexp_compile_impl()
270 regexp->initIgnoringLastIndex(sourceAtom, flags); in regexp_compile_impl()
348 RootedAtom sourceAtom(cx); in regexp_construct() local
355 sourceAtom = g->getSource(); in regexp_construct()
383 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct()
|
| /dports/www/firefox-esr/firefox-91.8.0/js/src/builtin/ |
| H A D | RegExp.cpp | 523 RootedAtom sourceAtom(cx); in regexp_compile_impl() local
532 sourceAtom = shared->getSource(); in regexp_compile_impl()
537 regexp->initIgnoringLastIndex(sourceAtom, flags); in regexp_compile_impl()
621 RootedAtom sourceAtom(cx); in regexp_construct() local
630 sourceAtom = shared->getSource(); in regexp_construct()
675 shared = CheckPatternSyntax(cx, sourceAtom, flagsArg); in regexp_construct()
683 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct()
749 RootedAtom sourceAtom(cx, AtomizeString(cx, args[0].toString())); in regexp_construct_raw_flags() local
750 if (!sourceAtom) { in regexp_construct_raw_flags()
764 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct_raw_flags()
|
| /dports/lang/spidermonkey78/firefox-78.9.0/js/src/builtin/ |
| H A D | RegExp.cpp | 434 RootedAtom sourceAtom(cx); in regexp_compile_impl() local
443 sourceAtom = shared->getSource(); in regexp_compile_impl()
448 regexp->initIgnoringLastIndex(sourceAtom, flags); in regexp_compile_impl()
532 RootedAtom sourceAtom(cx); in regexp_construct() local
541 sourceAtom = shared->getSource(); in regexp_construct()
586 shared = CheckPatternSyntax(cx, sourceAtom, flagsArg); in regexp_construct()
594 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct()
660 RootedAtom sourceAtom(cx, AtomizeString(cx, args[0].toString())); in regexp_construct_raw_flags() local
661 if (!sourceAtom) { in regexp_construct_raw_flags()
675 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct_raw_flags()
|
| /dports/www/firefox/firefox-99.0/js/src/builtin/ |
| H A D | RegExp.cpp | 519 RootedAtom sourceAtom(cx); in regexp_compile_impl() local
528 sourceAtom = shared->getSource(); in regexp_compile_impl()
533 regexp->initIgnoringLastIndex(sourceAtom, flags); in regexp_compile_impl()
617 RootedAtom sourceAtom(cx); in regexp_construct() local
626 sourceAtom = shared->getSource(); in regexp_construct()
671 shared = CheckPatternSyntax(cx, sourceAtom, flagsArg); in regexp_construct()
679 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct()
745 RootedAtom sourceAtom(cx, AtomizeString(cx, args[0].toString())); in regexp_construct_raw_flags() local
746 if (!sourceAtom) { in regexp_construct_raw_flags()
760 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct_raw_flags()
|
| /dports/mail/thunderbird/thunderbird-91.8.0/js/src/builtin/ |
| H A D | RegExp.cpp | 523 RootedAtom sourceAtom(cx); in regexp_compile_impl() local
532 sourceAtom = shared->getSource(); in regexp_compile_impl()
537 regexp->initIgnoringLastIndex(sourceAtom, flags); in regexp_compile_impl()
621 RootedAtom sourceAtom(cx); in regexp_construct() local
630 sourceAtom = shared->getSource(); in regexp_construct()
675 shared = CheckPatternSyntax(cx, sourceAtom, flagsArg); in regexp_construct()
683 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct()
749 RootedAtom sourceAtom(cx, AtomizeString(cx, args[0].toString())); in regexp_construct_raw_flags() local
750 if (!sourceAtom) { in regexp_construct_raw_flags()
764 regexp->initAndZeroLastIndex(sourceAtom, flags, cx); in regexp_construct_raw_flags()
|
| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/java.desktop/unix/classes/sun/awt/X11/ |
| H A D | MotifDnDDropTargetProtocol.java | 51 private long sourceAtom = 0; field in MotifDnDDropTargetProtocol
453 sourceAtom = property_atom; in processTopLevelEnter()
918 selatom = sourceAtom; in getData()
1041 sourceAtom = 0; in cleanup()
|
| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/java.desktop/unix/classes/sun/awt/X11/ |
| H A D | MotifDnDDropTargetProtocol.java | 51 private long sourceAtom = 0; field in MotifDnDDropTargetProtocol
453 sourceAtom = property_atom; in processTopLevelEnter()
918 selatom = sourceAtom; in getData()
1041 sourceAtom = 0; in cleanup()
|
| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/java.desktop/unix/classes/sun/awt/X11/ |
| H A D | MotifDnDDropTargetProtocol.java | 51 private long sourceAtom = 0; field in MotifDnDDropTargetProtocol
453 sourceAtom = property_atom; in processTopLevelEnter()
918 selatom = sourceAtom; in getData()
1041 sourceAtom = 0; in cleanup()
|
| /dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/src/solaris/classes/sun/awt/X11/ |
| H A D | MotifDnDDropTargetProtocol.java | 51 private long sourceAtom = 0; field in MotifDnDDropTargetProtocol
453 sourceAtom = property_atom; in processTopLevelEnter()
918 selatom = sourceAtom; in getData()
1041 sourceAtom = 0; in cleanup()
|
| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/java.desktop/unix/classes/sun/awt/X11/ |
| H A D | MotifDnDDropTargetProtocol.java | 51 private long sourceAtom = 0; field in MotifDnDDropTargetProtocol
453 sourceAtom = property_atom; in processTopLevelEnter()
918 selatom = sourceAtom; in getData()
1041 sourceAtom = 0; in cleanup()
|
| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/src/java.desktop/unix/classes/sun/awt/X11/ |
| H A D | MotifDnDDropTargetProtocol.java | 51 private long sourceAtom = 0; field in MotifDnDDropTargetProtocol
453 sourceAtom = property_atom; in processTopLevelEnter()
918 selatom = sourceAtom; in getData()
1041 sourceAtom = 0; in cleanup()
|
| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/src/java.desktop/unix/classes/sun/awt/X11/ |
| H A D | MotifDnDDropTargetProtocol.java | 51 private long sourceAtom = 0; field in MotifDnDDropTargetProtocol
453 sourceAtom = property_atom; in processTopLevelEnter()
918 selatom = sourceAtom; in getData()
1041 sourceAtom = 0; in cleanup()
|
| /dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/src/java.desktop/unix/classes/sun/awt/X11/ |
| H A D | MotifDnDDropTargetProtocol.java | 51 private long sourceAtom = 0; field in MotifDnDDropTargetProtocol
453 sourceAtom = property_atom; in processTopLevelEnter()
918 selatom = sourceAtom; in getData()
1041 sourceAtom = 0; in cleanup()
|
| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/java.desktop/unix/classes/sun/awt/X11/ |
| H A D | MotifDnDDropTargetProtocol.java | 51 private long sourceAtom = 0; field in MotifDnDDropTargetProtocol
453 sourceAtom = property_atom; in processTopLevelEnter()
918 selatom = sourceAtom; in getData()
1041 sourceAtom = 0; in cleanup()
|