Searched refs:sp_naming_function (Results 1 – 8 of 8) sorted by relevance
| /dports/biology/py-ete3/ete3-3.1.2/examples/phylogenies/ |
| H A D | species_aware_phylogenies.py | 65 t = PhyloTree(mynewick, sp_naming_function=None)
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/test/ |
| H A D | test_ncbiquery.py | 19 t = PhyloTree( "((9598, 9606), 10090);", sp_naming_function=lambda name: name)
38 t = PhyloTree( "((9606, (9598, 9606)), 10090);", sp_naming_function=lambda x: x.name )
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/evol/ |
| H A D | evoltree.py | 120 sp_naming_function=_parse_species, format=0, argument
136 sp_naming_function=sp_naming_function, **kwargs)
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/nexml/ |
| H A D | _nexml_tree.py | 101 sp_naming_function=_parse_species, format=0): argument
123 self.set_species_naming_function(sp_naming_function)
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/phylo/ |
| H A D | phylotree.py | 383 sp_naming_function=_parse_species, format=0, **kargs): argument
399 self.set_species_naming_function(sp_naming_function)
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| /dports/biology/py-ete3/ete3-3.1.2/examples/webplugin/wsgi/ |
| H A D | webplugin_example.py | 46 t = PhyloTree(tree, sp_naming_function=extract_species_code)
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/phylomedb/ |
| H A D | phylomeDB3.py | 872 …trees.setdefault(row["method"], {})["tree"] = PhyloTree(row["tree"], sp_naming_function=extract_sp…
895 tree["tree"] = PhyloTree(tree["tree"], sp_naming_function=extract_species_name)
1156 [row["lk"], PhyloTree(row["newick"], sp_naming_function=extract_species_name)])
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/coretype/ |
| H A D | tree.py | 1885 … subtree = source_tree.__class__(subtree_nw, sp_naming_function = source_tree._speciesFunction)
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