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Searched refs:sqBlock (Results 1 – 10 of 10) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/easel/
H A Desl_sqio_ncbi.c1168 sqBlock->count = 0; in sqncbi_ReadBlock()
1181 size += sqBlock->list[i].n; in sqncbi_ReadBlock()
1182 ++sqBlock->count; in sqncbi_ReadBlock()
1196 if (! sqBlock->complete ) in sqncbi_ReadBlock()
1199 status = sqncbi_ReadWindow(sqfp, sqBlock->list->C, max_residues, sqBlock->list); in sqncbi_ReadBlock()
1202 sqBlock->count = i = 1; in sqncbi_ReadBlock()
1203 size = sqBlock->list->n; in sqncbi_ReadBlock()
1209 sqBlock->complete = TRUE; in sqncbi_ReadBlock()
1266 size += sqBlock->list[i].n - sqBlock->list[i].C; in sqncbi_ReadBlock()
1268 ++(sqBlock->count); in sqncbi_ReadBlock()
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H A Desl_sqio_ascii.c1446 sqBlock->count = 0; in sqascii_ReadBlock()
1460 size += sqBlock->list[i].n; in sqascii_ReadBlock()
1461 ++sqBlock->count; in sqascii_ReadBlock()
1473 if (! sqBlock->complete ) in sqascii_ReadBlock()
1476 status = sqascii_ReadWindow(sqfp, sqBlock->list->C, max_residues, sqBlock->list); in sqascii_ReadBlock()
1479 sqBlock->count = i = 1; in sqascii_ReadBlock()
1480 size = sqBlock->list->n - sqBlock->list->C; in sqascii_ReadBlock()
1536 size += sqBlock->list[i].n - sqBlock->list[i].C; in sqascii_ReadBlock()
1538 ++(sqBlock->count); in sqascii_ReadBlock()
1546 sqBlock->complete = TRUE; in sqascii_ReadBlock()
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H A Desl_sqio.h61 …int (*read_block) (struct esl_sqio_s *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int ma…
135 extern int esl_sqio_ReadBlock (ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int m…
H A Desl_sq.h187 extern void esl_sq_DestroyBlock(ESL_SQ_BLOCK *sqBlock);
H A Desl_sqio.c525 esl_sqio_ReadBlock(ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int max_sequences, in… in esl_sqio_ReadBlock() argument
527 return sqfp->read_block(sqfp, sqBlock, max_residues, max_sequences, long_target); in esl_sqio_ReadBlock()
/dports/biology/hmmer/hmmer-3.3/easel/
H A Desl_sqio_ncbi.c1168 sqBlock->count = 0; in sqncbi_ReadBlock()
1181 size += sqBlock->list[i].n; in sqncbi_ReadBlock()
1182 ++sqBlock->count; in sqncbi_ReadBlock()
1196 if (! sqBlock->complete ) in sqncbi_ReadBlock()
1199 status = sqncbi_ReadWindow(sqfp, sqBlock->list->C, max_residues, sqBlock->list); in sqncbi_ReadBlock()
1202 sqBlock->count = i = 1; in sqncbi_ReadBlock()
1203 size = sqBlock->list->n; in sqncbi_ReadBlock()
1209 sqBlock->complete = TRUE; in sqncbi_ReadBlock()
1266 size += sqBlock->list[i].n - sqBlock->list[i].C; in sqncbi_ReadBlock()
1268 ++(sqBlock->count); in sqncbi_ReadBlock()
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H A Desl_sqio_ascii.c1446 sqBlock->count = 0; in sqascii_ReadBlock()
1460 size += sqBlock->list[i].n; in sqascii_ReadBlock()
1461 ++sqBlock->count; in sqascii_ReadBlock()
1473 if (! sqBlock->complete ) in sqascii_ReadBlock()
1476 status = sqascii_ReadWindow(sqfp, sqBlock->list->C, max_residues, sqBlock->list); in sqascii_ReadBlock()
1479 sqBlock->count = i = 1; in sqascii_ReadBlock()
1480 size = sqBlock->list->n - sqBlock->list->C; in sqascii_ReadBlock()
1536 size += sqBlock->list[i].n - sqBlock->list[i].C; in sqascii_ReadBlock()
1538 ++(sqBlock->count); in sqascii_ReadBlock()
1546 sqBlock->complete = TRUE; in sqascii_ReadBlock()
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H A Desl_sqio.h61 …int (*read_block) (struct esl_sqio_s *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int ma…
135 extern int esl_sqio_ReadBlock (ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int m…
H A Desl_sq.h187 extern void esl_sq_DestroyBlock(ESL_SQ_BLOCK *sqBlock);
H A Desl_sqio.c525 esl_sqio_ReadBlock(ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int max_sequences, in… in esl_sqio_ReadBlock() argument
527 return sqfp->read_block(sqfp, sqBlock, max_residues, max_sequences, long_target); in esl_sqio_ReadBlock()